Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50510 419 / 1e-147 indigoidine synthase A family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022419 [exp] 538 / 0 AT1G50510 412 / 8e-146 indigoidine synthase A family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254000 [exp] 476 / 2e-170 AT1G50510 491 / 5e-176 indigoidine synthase A family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04227 [flax] [poplar] Indigoidine_A Indigoidine synthase A like protein
Representative CDS sequence Show only first row Show all	>Lus10009716 pacid=23160090 polypeptide=Lus10009716 locus=Lus10009716.g ID=Lus10009716.BGIv1.0 annot-version=v1.0 ATGGGTTTTTTTTCCATTCTTTTCCCCTTTCAGATAGAAGGCCTGGTCAGATTATCTCAAGAAGTTTCTCAGGCTTTGTCTATTGGGCATGCCGTTGTTG CCCTTGAATCCACCATAATCTCCCATGGGATGCCGTACCCTCAAAATTTGACGACAGCCAAGGAAGTGGAAGACATAGTGAGAAAGAATGGAGCTGTGCC TGCTACAGTTGCAATTCTAGATGGCGTTCCTTGTGTAGGTTTAAGTGCAGAACAACTGGAGCGGCTCGCAACTCTAGGTACCAGAGCTCAGAAAACAGCT CGGAGGGATATTGCATATGTTGTTGCCAGTAGACGGAATGGTGCCACAACTGTTTCAGCAACCATGTTTTTTGCTTCTATGGTTGGTATCCATGTGTTTG TAACCGGAGGCATTGGAGGTGTTCATAGGCATGGAGAGCAAACGATGGATGTATCCTCTGATCTAACTGAGCTTGGAAGAACCCCAGTAGCAGTTATCTC AGCAGGAGTCAAATCAATATTAGATATTCCGAAAACCCTTGAATATTTGGAAACACAAGGAGTTTGTGTCATTGGCTATAAGACTAATGAATTCCCTGCG TTTTTCACAGACACCAGTGGCTGGGGGGGGGGGGATGCTACCACAAAGCTGAAGCTTGGGAATGGGATTCTAATAGGAGTTCCAATCCCGAAGGAACAAT CAGCATCTGGAAGTATGATTGAATCTGCAATCCAGAAAGCCCTTAAAGAAGCAAGGGAGAAGAATATAAGTGGAAGTGCTGAAACTCCTTTCTTGCTAGC AAGAGTGAATGAACTAACCGGAGGAGCTTCCTTGTCTGCAAGCATCACGAGATGTGATGTTGACTTCTTTTCTTACTACTGTTGGTTCCTCAGCCAAGTG ATAGACATTGCACTGGTGAAGAATAATGCTCTTGTTGGTGCTAAGATCGCTGTGGCACTTGCGCAGCTCCGAGAGCACTGA
AA sequence Show only first row Show all	>Lus10009716 pacid=23160090 polypeptide=Lus10009716 locus=Lus10009716.g ID=Lus10009716.BGIv1.0 annot-version=v1.0 MGFFSILFPFQIEGLVRLSQEVSQALSIGHAVVALESTIISHGMPYPQNLTTAKEVEDIVRKNGAVPATVAILDGVPCVGLSAEQLERLATLGTRAQKTA RRDIAYVVASRRNGATTVSATMFFASMVGIHVFVTGGIGGVHRHGEQTMDVSSDLTELGRTPVAVISAGVKSILDIPKTLEYLETQGVCVIGYKTNEFPA FFTDTSGWGGGDATTKLKLGNGILIGVPIPKEQSASGSMIESAIQKALKEAREKNISGSAETPFLLARVNELTGGASLSASITRCDVDFFSYYCWFLSQV IDIALVKNNALVGAKIAVALAQLREH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	0	1
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	4.5	0.9453
AT1G03270			CBS domain-containing protein ...		Lus10012375 [exp]	4.9	0.9128
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	5.7	0.9443
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	5.9	0.9307
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	7.1	0.8976
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	7.1	0.9439
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	7.7	0.9338
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	9.2	0.9147
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	9.9	0.9266
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	10.1	0.9304

Compare expression of checked genes

Lus10009716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.