Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49200 531 / 0 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 522 / 0 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 514 / 2e-179 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 513 / 2e-179 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 437 / 1e-149 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 434 / 9e-149 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 432 / 1e-147 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 431 / 3e-147 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 422 / 1e-143 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G37300 410 / 4e-139 WSD1 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004008 [exp] 485 / 6e-168 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 216 / 5e-64 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 192 / 3e-57 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 178 / 1e-49 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 167 / 1e-45 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 161 / 2e-43 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 157 / 4e-42 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 156 / 6e-42 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 152 / 1e-40 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014200 [exp] 613 / 0 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 468 / 7e-162 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 454 / 2e-156 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 258 / 5e-80 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 213 / 4e-63 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 190 / 2e-54 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 182 / 2e-51 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 180 / 9e-51 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 168 / 2e-46 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 51 / 4e-07 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009718 pacid=23160091 polypeptide=Lus10009718 locus=Lus10009718.g ID=Lus10009718.BGIv1.0 annot-version=v1.0 ATGGCGGGCGAGGTTAAAGCGGGAGGATTGATTGAAGAAGTGGCGGTGACAGCAAATATCAAGGCTAAAACATCCACCTTTACCACCACAGCAATTGGAG CGGAGGCGTTGAGCCCAGCTGCCCGTTTGTTCCATTCGCCCAAGTTCAACTGTTATATCGTGGCGATCATGGGTTACAAGATTAAGATCAATCCTGCTGC AATAAAGTCTGGGCTGGAGAGCACTTTGATCAAACACCCTCGTTTCTCAAGCAAACTGGTGGTAGATGGTTACAAAGGCAGAAAAATGAAATGGGAGAAG ACTATAGTCAATCTGGACGAGCACATCGTTATTCCGAATCTAGGCGATGGCAGTACTGTGGAGAACCCTGACGAATTCGTGGAAGACTATGTTTCTCATC TTAGTACATTCCCATTGGACTCCTCTAAGCCATTATGGGAGCTGCACCTGCTAAACGTCAGAACATCTGATGCGGAAGCTGTCGGAGTGTTCAAGATCCA TCATTCAGTAGGCGATGGCGCATCGTTGGTGTCTCTTCTTCTAGCTTGTACTCGAAACTCGTCGGACCCTGAAGTATTGCCTACTCTTCCCATTCGCAAT CGCAGGAGGACTCGAGCTAATGTCTCCAGTGGTGGATTTTGGTGGATCGTTTGGATGCTGCTGAAATTGACGTGGAACACTTTGGTGGATATGTTTCTGT TAGCAGCAACAATGTTGTTTTTGACAGACACCAAGACTCCTCTCAAAGCTCCAACCCGGGAGGGACAGAAGCCCAGGCGGTTTGTGCATCGCACTGTTAG CTTGGATGACATTAAGCTGGTCAAGAATACAATGAATACGACCATCAATGATGTTGTACTTGGAGGGACACAAGCTGGTCTCTCGCAATATCTCTATAGA AAATATGGTGAGAATGGGAAGCCTAATGAAACAGAAAGTAAGAATCTTCCAAGAAACATGCGCCTTAGAGCATGTGTTCTGGTTAACTTGAGACCAGCAA GAGGGATCCAGGATTTGGCTGATTTGATGGCGAAGGGACCCAAAGCGAAATGGGGATGGGGAAACTGGATAGGATACCTAATGCTTCCTCTCACCATTGC TCTACAAGACGATCCTTTGGACCATATTCGAGGTGCTAAGTCGGTAGACGATCGAAAGAAGCTGTCGTTGGAACCGGTTTTCACATGTCTAGGCGCTAGG GTAGTCATCCAGACGTTGGGAGTGAAGGTGGCTTCCTGGATTGCCAGTAGAGTTCTTTTCAACACTACGTTAGCCTTTTCGAATATGGTCGGTCCAGTTG AAGAAATTAGCTTTTATGGTCATCCGGTCTCTTATCTTGCTCCAAGCGTCTATGGACATCCCCACGCCTTGACCATCCATTTCCAGAGTTACTGCAACAA GATGACCATTTCCCTGGCAGTAGATCCAGGAGTGATTCCTGATCCTCATGTACTCTGCGATGACATTGAAGATTCTCTCAAAGCTATCAAGGAAGCTGTT GTAAAGAAATTCTTGCAGAAAGGACCTGACTCCGTGTAG
AA sequence Show only first row Show all	>Lus10009718 pacid=23160091 polypeptide=Lus10009718 locus=Lus10009718.g ID=Lus10009718.BGIv1.0 annot-version=v1.0 MAGEVKAGGLIEEVAVTANIKAKTSTFTTTAIGAEALSPAARLFHSPKFNCYIVAIMGYKIKINPAAIKSGLESTLIKHPRFSSKLVVDGYKGRKMKWEK TIVNLDEHIVIPNLGDGSTVENPDEFVEDYVSHLSTFPLDSSKPLWELHLLNVRTSDAEAVGVFKIHHSVGDGASLVSLLLACTRNSSDPEVLPTLPIRN RRRTRANVSSGGFWWIVWMLLKLTWNTLVDMFLLAATMLFLTDTKTPLKAPTREGQKPRRFVHRTVSLDDIKLVKNTMNTTINDVVLGGTQAGLSQYLYR KYGENGKPNETESKNLPRNMRLRACVLVNLRPARGIQDLADLMAKGPKAKWGWGNWIGYLMLPLTIALQDDPLDHIRGAKSVDDRKKLSLEPVFTCLGAR VVIQTLGVKVASWIASRVLFNTTLAFSNMVGPVEEISFYGHPVSYLAPSVYGHPHALTIHFQSYCNKMTISLAVDPGVIPDPHVLCDDIEDSLKAIKEAV VKKFLQKGPDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	0	1
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	1.0	0.9502
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	1.7	0.9446
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	2.0	0.9408
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	2.4	0.9490
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	5.5	0.9348
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	7.3	0.9301
					Lus10028488 [exp]	12.0	0.9064
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	12.7	0.9318
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	15.5	0.9341
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	16.6	0.9250

Compare expression of checked genes

Lus10009718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.