Plant FIBer expression Database

Lus10009720 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG00510 309 / 1e-106 ATMG00510.1, NAD7 NADH dehydrogenase subunit 7 (.1)
ATCG01110 113 / 3e-30 ATCG01110.1, NDHH NAD(P)H dehydrogenase subunit H (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000459
[exp]
315 / 2e-111 ATMG00510 306 / 1e-104 NADH dehydrogenase subunit 7 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G071350
[exp]
74 / 4e-18 ATMG00510 72 / 1e-16 NADH dehydrogenase subunit 7 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00346 Complex1_49kDa Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Representative CDS sequence
>Lus10009720 pacid=23173074 polypeptide=Lus10009720 locus=Lus10009720.g ID=Lus10009720.BGIv1.0 annot-version=v1.0
ATGATGGCCCAAGAACACGCTTATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTGTTATTCCGTGAAA
TAACTCGAATTTCAAATCATTCACTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAAGAGCGGGAGAAATT
GTTGGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGAT
ATTGATTCCTCCACACAACAATTTGCTTCTCGTATCGACGAATTAGAAGAGATGTCAACCGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGTA
CTGTCACTGCGCAGCAAGCAAAGGATTGGGGATTCAGTGGTGTAATGTTAAGAGGTCGTGCGACATGA
AA sequence
>Lus10009720 pacid=23173074 polypeptide=Lus10009720 locus=Lus10009720.g ID=Lus10009720.BGIv1.0 annot-version=v1.0
MMAQEHAYSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRD
IDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGRAT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
ATMG00510 ATMG00510.1, NA... NADH dehydrogenase subunit 7 (... Lus10009720
[exp]
0 1
ATMG00510 ATMG00510.1, NA... NADH dehydrogenase subunit 7 (... Lus10000459
[exp]
1.0 0.9999
ATMG00510 ATMG00510.1, NA... NADH dehydrogenase subunit 7 (... Lus10000460
[exp]
2.0 0.9984
ATMG00510 ATMG00510.1, NA... NADH dehydrogenase subunit 7 (... Lus10015033
[exp]
3.5 0.9940
AT2G07675 Ribosomal protein S12/S23 fami... Lus10002330
[exp]
4.0 0.9760
ATMG01360 ATMG01360.1, CO... cytochrome oxidase (.1) Lus10004084
[exp]
4.0 0.9899
ATMG01360 ATMG01360.1, CO... cytochrome oxidase (.1) Lus10009204
[exp]
5.0 0.9863
ATMG00080 ATMG00080.1, RP... ribosomal protein L16 (.1) Lus10004083
[exp]
5.3 0.9802
ATMG00650 ATMG00650.1, NA... NADH dehydrogenase subunit 4L ... Lus10004838
[exp]
5.5 0.9831
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Lus10034346
[exp]
7.9 0.9369
AT3G53090 UPL7 ubiquitin-protein ligase 7 (.1... Lus10035589
[exp]
10.9 0.9497

Lus10009720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.