Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20300 596 / 0 Protein of unknown function (DUF3537) (.1) AT1G50630 550 / 0 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 413 / 5e-139 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT4G03820 387 / 6e-129 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT2G21080 235 / 7e-71 unknown protein AT1G67570 226 / 6e-67 Protein of unknown function (DUF3537) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002334 [exp] 818 / 0 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 439 / 5e-149 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 410 / 1e-137 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 265 / 1e-81 AT2G21080 450 / 5e-157 unknown protein Lus10011371 [exp] 229 / 6e-68 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 190 / 1e-53 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 176 / 3e-48 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 156 / 7e-42 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10030099 [exp] 124 / 2e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356200 [exp] 624 / 0 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 275 / 2e-85 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 269 / 4e-83 AT2G21080 447 / 9e-156 unknown protein Potri.008G178100 [exp] 224 / 4e-66 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 212 / 8e-62 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 204 / 1e-58 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10009722 pacid=23173075 polypeptide=Lus10009722 locus=Lus10009722.g ID=Lus10009722.BGIv1.0 annot-version=v1.0 ATGAAGTACACACGTTCCTTAAATGGCAATTGTGTTGACATTGCAACATCTAATTGGGGGAAGCATGTGGTGGACACACTACTGAAGGGTCTCAATGGGC TTCATAGGAAAGAAACATATCCTACTGGGGATATGAACTTCATAGTGCAGCATTTCTTGGATATGATGAAGCTCGATGGTCTCTCCCCAGCTACCAGCCC AATGTGTGTGTACTTGGATGATGCAAAGTCACACTCAACCCGTACCAATATGGTGCATCCCATGTTCAAGCTGTCCACAATTACTCAGAGATATGCAACT ATTTTCGGCCCCATCGATGGACCGAGGGACTGGCCACAACATGGTGGACCTAAGATCATCCCCAACCGAAATCTTCTCCGTGTCCAAGAAGACCAAGGCA CACCCGAATCCACAACGATATGGATTGGACTGAAGATGTGGACCGATATTGTACCGCTTGCAACCAAGATGGACACATATGAGGTCTTTGTCCGACCGTC CCACCATCATAAAAGGCTGGCTTCCCCTGAATTCCCGCAACTTAATCCTGCAGCCAACACAACACAATCTTCCATTCTTCTTCGAGATTTCTCTCCTCCT CTCGGTCTCATCCATGACCTTGACTTGCAAATTTTAAGATCAGCCATGGAAGACAGCCTGATCCGTAAAACCAATTACGCCAACTCCGGCGCTGTCGCCG GCACCCCCAACAACAACAGATATTCCCGGACCATATCGCACGTTTACGACGAGCTCCACTCTTTTCGCCGATGCCTACGGTGGATGTGCCTGGACCAGTC CAATATATGGGCCGCATCCATCTCCTGGTTCGTTTTCATCCTCCTCGCCATCGTCGTCCCAGCGATTTCACATTTCATCCTCGCCTGCTCCTCCTGCGAC AGCACTCACGAGCGTCCCTTCGACCCCGTCGTCCAGATCTCTCTCAGCGGGGTTGCCACGCTTTCTTTCCTCTGCCTCTCTAGGTTTATCAGCAAGTATG GCCTCAGGCGCTTTTTGTTCTTCGATCGCCTCTGCCACGACAGCGACACCGTCAGGAAGGGATACACCAAGAAGCTCGATAGATCATTGAAGCTGCTAGC GATCTTCGTGTTGCCATGCTTTTTGGCAGAATCGGGATACAAGATATGGTGGTATGCATCTGGTGCTTCCCAGATCCCATTCTTGGGAAATGTTATCCTT AGTGACACAGTGGCATGCGGGATGGAGCTGCTATCTTGGCTTTACCGGACAACTATAATCTTCCTTGTCTGCGTTCTTTTCCACCTGATTTGCCACCTCC AGATCTTGCGGCTCCAGGACTTTGCCAAATTTTTCGAAGTTGATTCGGATATGGGCGACGTCTTATATGAGCATCTCAAGATTAGAAAGCATCTGAGGAT CATCAGCCACCGTTATCGTGCATTTGTGCTTTGGGCTTTGGTTATGGTCACTGGGAGCCAGTTTGCCTCGTTGCTTGCCACCACCAAGCCCACTGCCATT GTTGATATCTACCGTGCAGGAGAACTTGCGCTTTGTTCAATGACACTTGTGGCGGGTGTCCTGATTCTATTGCGAAGTGCGACGAAGATAACGCACAAGG CACAAGCTGTGACAAGCTTAGCTGCAAAGTGGAACGTGTGCGCCACGCTTGAAAGTTTCGATGCGAACGACGGTGAGACTCCCACGGCTTCGACAACGGA TGGAATTGGAGACTCGGGAACAGAAACTGATGATGCCGGCGACGAAGAGGACGAGTTAGACAATACCAAAATCATGCATGCTTACGCCTACAGTACCCTC TCGTTCCAGAAGCGACAAGCATTGGTGACATACTTCGAGAACAACAGGGCAGGAATCACAGTTTACGGATTCACCCTAGATAGGAGCACCCTGCATTCCA TTTTTGGCGTTGAGCTTGCTCTTGTTCTCTGGTTGCTAGGGAAGACCATCGGCATTTCTTGA
AA sequence Show only first row Show all	>Lus10009722 pacid=23173075 polypeptide=Lus10009722 locus=Lus10009722.g ID=Lus10009722.BGIv1.0 annot-version=v1.0 MKYTRSLNGNCVDIATSNWGKHVVDTLLKGLNGLHRKETYPTGDMNFIVQHFLDMMKLDGLSPATSPMCVYLDDAKSHSTRTNMVHPMFKLSTITQRYAT IFGPIDGPRDWPQHGGPKIIPNRNLLRVQEDQGTPESTTIWIGLKMWTDIVPLATKMDTYEVFVRPSHHHKRLASPEFPQLNPAANTTQSSILLRDFSPP LGLIHDLDLQILRSAMEDSLIRKTNYANSGAVAGTPNNNRYSRTISHVYDELHSFRRCLRWMCLDQSNIWAASISWFVFILLAIVVPAISHFILACSSCD STHERPFDPVVQISLSGVATLSFLCLSRFISKYGLRRFLFFDRLCHDSDTVRKGYTKKLDRSLKLLAIFVLPCFLAESGYKIWWYASGASQIPFLGNVIL SDTVACGMELLSWLYRTTIIFLVCVLFHLICHLQILRLQDFAKFFEVDSDMGDVLYEHLKIRKHLRIISHRYRAFVLWALVMVTGSQFASLLATTKPTAI VDIYRAGELALCSMTLVAGVLILLRSATKITHKAQAVTSLAAKWNVCATLESFDANDGETPTASTTDGIGDSGTETDDAGDEEDELDNTKIMHAYAYSTL SFQKRQALVTYFENNRAGITVYGFTLDRSTLHSIFGVELALVLWLLGKTIGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	2.6	0.9612
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	3.9	0.9531
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	3.9	0.9555
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	4.5	0.9593
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	4.9	0.9478
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	5.7	0.9532
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	5.9	0.9441
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	6.7	0.9342
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	7.5	0.9264
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	8.0	0.9359

Compare expression of checked genes

Lus10009722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.