Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 657 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 552 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 552 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 483 / 3e-165 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 442 / 1e-151 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44560 436 / 9e-149 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44540 432 / 2e-147 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT1G02800 424 / 7e-144 ATCEL2 cellulase 2 (.1) AT4G02290 421 / 2e-142 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT2G44570 418 / 6e-142 ATGH9B12 glycosyl hydrolase 9B12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035316 [exp] 642 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10032377 [exp] 550 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 549 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 545 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 531 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10033957 [exp] 526 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10017402 [exp] 483 / 1e-165 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10008208 [exp] 447 / 7e-153 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 426 / 1e-144 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157600 [exp] 686 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 684 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 555 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 549 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 533 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.002G202400 [exp] 438 / 2e-149 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 427 / 6e-145 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.004G162200 [exp] 418 / 7e-142 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.001G083200 [exp] 411 / 5e-139 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.015G128000 [exp] 409 / 2e-138 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10009724 pacid=23173072 polypeptide=Lus10009724 locus=Lus10009724.g ID=Lus10009724.BGIv1.0 annot-version=v1.0 ATGGAGCCCAAACCTGAGCAACAGAAGCAAGAACACTCGACTCTGTTGTTGAAGATCTGCATTACTCTTAATCTCAACCTTCTCTTCCAAATTATTATCA TCACCATCTCCTTTCTCCTACCCTTAACCCTTCAGTCTTCCTCCTCCCATGACTATGGCGATGCTCTGTCAAAGAGTCTCCTCTATTTCGAATCACAACG CTCCGGCCGCCTCCCTTCTTCTCTCCAACGCGCCTCCTGGCGCCACCACTCCGGTCTCCTCGACGGCCTCCAACAAGGCGTGGATTTGGTAGGAGGATAC TATGATGCTGGAGACAACGTTAAATTCGGTCTTCCAATGGCATTCACCATAACCATGCTGTCTTGGGGAGTGATCGAGTACGTCGGAGATATTGCCGCAG CGGGAGAATACCACCACGCCCTTGAGGCAATTAAGTGGGGCACTGACTATTTTATCAAAGCTCATACCAGTCCCAATGTCCTCTGGGTCCAAGTGGGAGA CGGTGACAACGATCACTACTGCTGGCAGCGGCCGGAAGATATGACGACGTCCCGACTAGCTTTCAAGGTGGACCACAACAATCCGGGCTCTGAAGTTGCC GGAGAGACCGCAGCCGCAATGGCCGCGGCGTCGATTGTGTTCAGTAAAACAAATCCACATTACTCGCAATTACTATTGCGCCATGCACAACAACTATTTG CATTTGCAGACAAATATAGAGGAAAGTATGATGAAAGCGTAAAGGTGGTGAAGGGTTTCTACACATCGACGAGTGGGTACAAGGACGAGTTGTTGTGGGG TGCCATATGGCTCTACAAAGCCACAAACAACCCAACTTACCTCAACTATGTCTTGCAAAATGCTTACGATTTCGGAGGGGCCACTTGGGCCGTCAAGGAG TTCAGTTGGGATATTAAATTTCCTGGTCTTCAGCTCCTTGCATCCACCTTATTAAAGGATGAAAGGCACAAAAACCACAGCAGCATACTAGAAAGTTACC GCTCGAAAGCAGAGTACTATATGTGCGCCTGCCTCAACAAGAACCCCGGAGACGACAATAATGTGCACCTCACCCCAGGAGGCTTAATCTACATCCGCCA ATGGAACAACCTCCAGTACGCCTCGGCGGCTGTGTTCCTCCTCACCGTATACTCTGATTATTTAGAGTCAACTAATCGACGCCTCAAATGCGGTGGCAGC TACGTCGACCCTCCCGAGATCCTACGATTCGCTAAATCACAAGTCAACTACTTCCTAGGTGACAATCCTATGAACATGAGCTACCTTGTTGGCTATGGCA CAAGATACCCACAAATGGTGCACCACAGAGGAGCATCCATCGTGTCGGTTAAGGAGCACAAGGATTTTATTGGGTGCATGCAAGGATACGATATTTGGTA CACCAGGAAAGCTCCAAACCCTAATGTTCTTGTAGGAGCACTCGTTGGTGGACCTGATGAGAATGATGCGTTTCAGGAGGAGAGACAGAATCACATGCAG ATGGAAGCATGCACTTACAATACAGCCACCCTCGTTGGGGTTTTGGCAAGACTAGATAGAATAGAACAAAAAGAAGTCGACTCGGTTGATGAATAA
AA sequence Show only first row Show all	>Lus10009724 pacid=23173072 polypeptide=Lus10009724 locus=Lus10009724.g ID=Lus10009724.BGIv1.0 annot-version=v1.0 MEPKPEQQKQEHSTLLLKICITLNLNLLFQIIIITISFLLPLTLQSSSSHDYGDALSKSLLYFESQRSGRLPSSLQRASWRHHSGLLDGLQQGVDLVGGY YDAGDNVKFGLPMAFTITMLSWGVIEYVGDIAAAGEYHHALEAIKWGTDYFIKAHTSPNVLWVQVGDGDNDHYCWQRPEDMTTSRLAFKVDHNNPGSEVA GETAAAMAAASIVFSKTNPHYSQLLLRHAQQLFAFADKYRGKYDESVKVVKGFYTSTSGYKDELLWGAIWLYKATNNPTYLNYVLQNAYDFGGATWAVKE FSWDIKFPGLQLLASTLLKDERHKNHSSILESYRSKAEYYMCACLNKNPGDDNNVHLTPGGLIYIRQWNNLQYASAAVFLLTVYSDYLESTNRRLKCGGS YVDPPEILRFAKSQVNYFLGDNPMNMSYLVGYGTRYPQMVHHRGASIVSVKEHKDFIGCMQGYDIWYTRKAPNPNVLVGALVGGPDENDAFQEERQNHMQ MEACTYNTATLVGVLARLDRIEQKEVDSVDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10009724 [exp]	0	1

Compare expression of checked genes

Lus10009724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.