Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26850 613 / 0 VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase AT5G55120 600 / 0 VTC5 VITAMIN C DEFECTIVE 5, galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087200 [exp] 674 / 0 AT4G26850 633 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase Potri.001G355600 [exp] 662 / 0 AT4G26850 624 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase Potri.017G126100 [exp] 547 / 0 AT4G26850 547 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009725 pacid=23173076 polypeptide=Lus10009725 locus=Lus10009725.g ID=Lus10009725.BGIv1.0 annot-version=v1.0 ATGCTCGTTGTTACACTAGGGAAAGTGGGTTGCGAAGGGGGTAGACGAGTTGTAGACATCACGGCTATACACGGGGTAAGTCGGCCTCTGCTTCATGTCC GTCGCAAGGAGGTTATTGTAATTCAGAGCAACCCTTCTGCGCACGGCGGACGTGGAGCCTTGCCTTCCGAAGGCGGGAGTCCTTCTGATCTCCTCTTCCT CGCCGGCGGTGATAAGATGATGCTGAGGATTAAGAGGGTTCCCACCGTCGTGTCCAACTACCAGAAGGAGGAGACGGAAGACGCTGGAGGAGGTTGCGGC CGCAACTGCCTTCAGAATTGTTGCATTCCAGGAGCAAAGCTTCCTCTGTATACTTTCAAGAGGGTGGACGTTATTCCTGGTGATAAGTGTGCTCTTGTCC ATGATGATAACCCGGCTCCCGTTGCATTCCTCGACTCCCTCCTTCTTGGACAGTGGGAGGACCGCATGCAGAGAGGACTCTTTCGCTATGATGTCACTGC ATGTGAAACTAAGGTGATTCCTGGGCGGTATGGCTTTGTCGCCCAACTGAATGAAGGCCGCCACTTGAAGAAGAGGCCAACAGAGTTCCGAGTGGACAAG GTCCTTCAGCCCTTTGATGGAAACAAATTCAACTTCACCAAAGTTGGCCAAGAGGAAGTGCTCTTCCAGTTTGATGCAAGTGAAAATGGACAAGTTGAGT TCTTCCCAGATGCTCCTGTTGATGCTGACAAGTCTCCTAGTGTGGTTGCCATTAATGTTAGCCCTATCGAGTACGGCCATGTGCTGTTGATCCCACGCAT CTTGGAGTGCTTACCCCAGAGGATTTATCGTGACAGCTTTTTGCTTGCACTCTACATGGCCGTTGAAGCTGGAAACCCTTATTTCAGACTGGGTTACAAT AGTCTTGGTGCATTTGCTACCATCAACCACCTTCACTTCCAGGCTTATTATTTGGCTTTGCCCTTCCCGATCGAGAAGGCTCCTACTAAGAAGGTGACCA CGATGGGTGATGGTGTGAAAATATCTTACCTGATCGATTATCCAGTTAGGGGCCTTGTCTTTGAAGGCGGAAACACACTGCAGGATTTGTCCAATACTGT CTCTGATGCCTGCATTTGTCTTCAAGATAACAACGTTCCACACAATGTCCTGATTGCTGATTGTGGAAAGCGCGTCTTCCTCTTGCCTCAATGCTATGCT GAGAAGCAAGCCCTTGGCGAAGTGAGTGCTGAGCTTCTGGATACCCAGGTGAATCCTGCAGTTTGGGAGATCAGTGGACATATGGTGCTGAAGAGGAAGA AAGATTATGAGGAAGCTTCGGAGGAGAACGCTTGGAGGCTTCTTGCTGAAGTGTCCCTCTCTGAAGAGAGGCTCGAGGAAGTGAAAGCTCTAATCTTTGA AGCCATCTCGTACAGTTTGAGTGGCAGTGACAAAGAAGAGACCCAGGTTGCAGGAGCTAAGAAACCCGAGTCTAGTGAAGGAGTGGGCGGAATCAACAAA GGTCCCAACTGTGCTGTTGTGTCGGGGACTCCAGAGTGCCTGGTTCTGCAGTAA
AA sequence Show only first row Show all	>Lus10009725 pacid=23173076 polypeptide=Lus10009725 locus=Lus10009725.g ID=Lus10009725.BGIv1.0 annot-version=v1.0 MLVVTLGKVGCEGGRRVVDITAIHGVSRPLLHVRRKEVIVIQSNPSAHGGRGALPSEGGSPSDLLFLAGGDKMMLRIKRVPTVVSNYQKEETEDAGGGCG RNCLQNCCIPGAKLPLYTFKRVDVIPGDKCALVHDDNPAPVAFLDSLLLGQWEDRMQRGLFRYDVTACETKVIPGRYGFVAQLNEGRHLKKRPTEFRVDK VLQPFDGNKFNFTKVGQEEVLFQFDASENGQVEFFPDAPVDADKSPSVVAINVSPIEYGHVLLIPRILECLPQRIYRDSFLLALYMAVEAGNPYFRLGYN SLGAFATINHLHFQAYYLALPFPIEKAPTKKVTTMGDGVKISYLIDYPVRGLVFEGGNTLQDLSNTVSDACICLQDNNVPHNVLIADCGKRVFLLPQCYA EKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERLEEVKALIFEAISYSLSGSDKEETQVAGAKKPESSEGVGGINK GPNCAVVSGTPECLVLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	0	1
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	3.0	0.8824
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	5.9	0.8389
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	6.5	0.8795
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	7.1	0.8321
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	7.7	0.8811
AT3G52740			unknown protein		Lus10021366 [exp]	7.7	0.8553
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	8.5	0.8349
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	13.6	0.8443
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	15.2	0.8548
AT1G50020			unknown protein		Lus10033758 [exp]	21.4	0.8007

Compare expression of checked genes

Lus10009725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.