Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 64 / 1e-12 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 56 / 5e-10 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22760 52 / 3e-08 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 49 / 3e-07 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) ATCG00680 40 / 0.0002 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011578 [exp] 145 / 2e-43 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 139 / 1e-40 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 69 / 2e-14 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 69 / 2e-14 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 64 / 7e-13 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 62 / 3e-12 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 61 / 2e-11 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095250 [exp] 82 / 4e-19 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 79 / 4e-18 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 77 / 2e-17 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 50 / 1e-07 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G140700 [exp] 43 / 2e-05 ATCG00680 634 / 0.0 photosystem II reaction center protein B (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009726 pacid=23173077 polypeptide=Lus10009726 locus=Lus10009726.g ID=Lus10009726.BGIv1.0 annot-version=v1.0 ATGGGGATCGGTGGAAAAGAAAGAAGAGAAGAGGACCCGGCCGTCGCCGACGCGGCCGGTGGCAGCAACGAAGAAGCTGATTGCAAGAAGAGGACTGCCA AGGCATCAGTTCTAGGAGATGCGATCAAGTACCTGAAGCAAGTCCAAGAGCAATCCAAGACGCTCGAGGAACAAGTAAAGAGGAAGATAATCAAAACAGT AGTCTACGTGACGAAGTCTCGTGTATACAACGTCAACGACGACGCATTGTCATCATCAACAGATGAGAATTCAGATGGCTTTTCATTCAAACAAACCCTG CAGTTTCCAGAGTTCAAAGTTGGAGTCTCGGGGAAAGATGTCATGATCAGAATTCACATGGCTCGTTTAGGAATAACCGATTCGTGGGGTGGTTGGAATA TTATTCGGGGAACTATAACGAGAAACAAAAAGGATGCCTCCTGA
AA sequence Show only first row Show all	>Lus10009726 pacid=23173077 polypeptide=Lus10009726 locus=Lus10009726.g ID=Lus10009726.BGIv1.0 annot-version=v1.0 MGIGGKERREEDPAVADAAGGSNEEADCKKRTAKASVLGDAIKYLKQVQEQSKTLEEQVKRKIIKTVVYVTKSRVYNVNDDALSSSTDENSDGFSFKQTL QFPEFKVGVSGKDVMIRIHMARLGITDSWGGWNIIRGTITRNKKDAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	2.0	0.8624
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	4.9	0.8780
					Lus10005514 [exp]	9.6	0.8329
					Lus10026021 [exp]	10.8	0.7444
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	11.1	0.8329
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	12.4	0.8329
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	13.6	0.8329
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	14.7	0.8329
					Lus10002267 [exp]	15.4	0.7003
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10019689 [exp]	15.5	0.6736

Compare expression of checked genes

Lus10009726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.