Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003899 [exp] 82 / 4e-18 ND / Lus10039373 [exp] 77 / 2e-17 ND / Lus10020961 [exp] 79 / 1e-16 ND / Lus10002975 [exp] 70 / 2e-13 ND / Lus10011759 [exp] 69 / 2e-13 ND / Lus10020595 [exp] 64 / 9e-12 ND / Lus10011832 [exp] 58 / 9e-11 ND / Lus10012614 [exp] 53 / 1e-08 ND / Lus10029540 [exp] 45 / 3e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009729 pacid=23173071 polypeptide=Lus10009729 locus=Lus10009729.g ID=Lus10009729.BGIv1.0 annot-version=v1.0 ATGAAGGAGTTGGGGGATGATTTATGGTTGCTTGAATGTTTGTCGCCAGGTGAAGTCAATCGTATTGTCAAGCTGGATCGATTCTTTTTTAGCACTGCCA AAGTTATGATGGACAAATGGCTCCCTTGTGCGGGTCGTATCTCTGTTATGCACAAGCAAGGTTTGACGTGGGTTATCGTTAAAGGTATCCCTTTACACCT TATTTCTCAAGCTCTGTTCAAGTCTATTGGTGATCGATGTGGGGGTTTTATTGAAGCCAGTATGTCTCTATTTCTGATGGGCTCTCTTAAGAGTTGTTTT TCCGATCTCTATTCCTTTGAGAAGGGATGGGGAAGTGATACAGAGGTGGCTGGAATGCAGATTCCGACGAAGACCAAAGGAAAGGCAGGGCGTATTACGG CGGGCATCCCTAGAGCGTGGAGGTTGGAACCTGGGGAGAGCTCAAAGGGGCCATCTTTCTCTGTGTCGACCTCTACTGCGACAATGGTGGTGTCGTCCCC GGAGGAGGATGGTGTAAGAATTCTTGAGGTTGACGGTGAGAGCGGGATGATGGCGGCTCTGGAGGTCACGATGGGAATGGATGTGGACTGCAGGCCCATT GATGCTGATGTATGTGGAGGTCAGCTGCCTCTAATGGAACTGAGGTTTGACATGATTCGTTCAGACGAGGCAGATGTGTGGGGATCCAAGCTGATGTTCT TATTCCAGAGATTTTCGTCATTCCCGGGTTTCAGGATGTATAAGGATGGTGGGTTTTTTTTGGAAGGTTAG
AA sequence Show only first row Show all	>Lus10009729 pacid=23173071 polypeptide=Lus10009729 locus=Lus10009729.g ID=Lus10009729.BGIv1.0 annot-version=v1.0 MKELGDDLWLLECLSPGEVNRIVKLDRFFFSTAKVMMDKWLPCAGRISVMHKQGLTWVIVKGIPLHLISQALFKSIGDRCGGFIEASMSLFLMGSLKSCF SDLYSFEKGWGSDTEVAGMQIPTKTKGKAGRITAGIPRAWRLEPGESSKGPSFSVSTSTATMVVSSPEEDGVRILEVDGESGMMAALEVTMGMDVDCRPI DADVCGGQLPLMELRFDMIRSDEADVWGSKLMFLFQRFSSFPGFRMYKDGGFFLEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009729 [exp]	0	1
AT1G11920			Pectin lyase-like superfamily ...		Lus10018429 [exp]	1.4	0.8700
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	8.2	0.8079
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	11.7	0.7709
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	13.7	0.7063
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10013484 [exp]	14.0	0.7020
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	15.0	0.7775
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	15.2	0.7580
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	15.9	0.7596
					Lus10009632 [exp]	17.4	0.7545
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	18.5	0.7539

Compare expression of checked genes

Lus10009729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.