Plant FIBer expression Database

Lus10009732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73020 781 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000526
[exp]
1279 / 0 AT1G73020 818 / 0.0 unknown protein
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0416 Anoctamin-like PF04547 Anoctamin Calcium-activated chloride channel
Representative CDS sequence
>Lus10009732 pacid=23145160 polypeptide=Lus10009732 locus=Lus10009732.g ID=Lus10009732.BGIv1.0 annot-version=v1.0
ATGAAAGGGGATGAAGGAGAAGAACACGCTGGTTTTGAGATAGGCTTGGTGGTTCGGAAGAGGATTCTCAAACAACAAGATGATACTGTTGATTGCATTG
AGGTTCTTCTTAATGAGTTCAGACATGTCGGATTCACTGTGGAGACGCTGGCTGCATCTTTGGAGAGATTGGGGCAGGCTGCAGCTGATTTGCAGTTGAG
GAAACCTACTTATATTGGGATCGATCTCCCATTTCAGTGGGAGGATGTGAATGCATTTGTGAGACAGCCAGATGGCACATTGTTCAGCTGGTGTGAACGT
TTCCGATGCTACCAACACATGTTGTATGGAATTGTAAATAGAACCGAGTCAGGCATTAGTCTAAAATTGGATGGAACGGTACTCGTCTGGAACATCAGGG
AACCTTTAGTGCAGAAGTTGGAATCTGAGGGCATTGTCAAACATATTTTCCCTCTTCATGATGAAGCTAAGAGGAAGAAGCTCCTCAGAAGTTGGGTACT
GAACAAGAGAAACTTCACTAATCAAGACATTGACGACATGTATTCATATTTTGGACTAAAGATTGCTATTTATTTTGCGTTTCTACGGATGTATGCGCGC
TGGATAGTGTTTCCTGCCCTATTGGCTATGATAGTGCAGTTGGTTAATTTTGGCTCAATGCAGTTCTTAGTGCTCCCTGTGTTCTTCACAAGCACAACGT
TATGGGCTGTATTGTTTTTCCAGTTCTGGAAACGAAAAAACTATTCCCTTATTTCCAGGTGGCAGATAAATTGCTCAGTTACTGCTGGGCAAGGATATAA
GTTCTTGGGAATTGAATGTACTTCCATAAAGACTCGACTAGAGCTGCTAAAAGCAATGGGGGATAGGAACAGAGAGAAAGCAGTTTATCAGAGATATGAA
TGGTTTGGGCACCTTGTTCGATTTCGGAACAATGCGCTTATTATTCTTGGCATTGTTTGCCTCCAGTTGCCCTTTGAATTAGCCTATGCTCACCTCTATG
AGGTTCTTAAGTCGGATGTCACAAAGTTCACATTAACGGCTGGATACATTATTCTCATTCAATACTTCACAAAGCTCGGGGCAAAATTATCAGTGAGATT
GATAAAATATGAAAACAATGAAAACTCACAGTTTCAGGCTGACAGCTTGGTGTACAAAGTATTCGGGCTGTACTTCATGCAATCATACATTGGAGTTTTC
TATCATGCACTTTTGCATCGTAATTTCCTGACCCTTCGCCAGCTCTTGATTCAGCGTCTCATAATCTTCCAGGTATTGGAAAATATGTTGGAACATTCAC
TACCCTATGTCAAATACAGCATCAAGAAGTACAGAGCAGTAAGAAACAAGAAACGCAGGAACAGTGCATCTGGCAATAAGAAGATTCTCTTCCAATCCAA
GGTGGAGAAAGAGTACCTAAAACCTGCTTATAATGCAAGCATAGGTGATGAATTTGAGGATGGCCTTTTTGATGACTATCTGCAGCTGGCATTGCAGTTT
GGAATGATCATGATGTTTGCTTGTGCTTTCCCTCTCGCATTTGTCTTCGCTGCTGTGAACAGCTTCACAGAGGTTAGAACAGATGCACTAAAGCTGCTTG
CCATGTTCCGAAGGCCTGTTCCTCGTGTTGCTGCCACGATTGGAGCTTGGATCAACATATACCAGTTCCTAATAGTTATGTCGATCTGCACAAACTCGGT
CCTTCTAGTTTGCATGTACGATCAGGAGAGAAAATGGCAAATAGAACCAGGACTTGCTGGAATTCTCATAATGGAACATGTCCTCCTTCTCATCAAGTTT
GGATTTTCACAATTTGTTCCAGAGGAACCTGCCTGGGTAAGAGCACGACGGGTCTGGAACGCCGAGCAAGTGCAGGATGCATGTGCTAAACAGCTTCTCA
AGAGCCTTCCAAGCCGAGAAAGAATACCCGAAGAAGGAAACAAGTGCGAGTGA
AA sequence
>Lus10009732 pacid=23145160 polypeptide=Lus10009732 locus=Lus10009732.g ID=Lus10009732.BGIv1.0 annot-version=v1.0
MKGDEGEEHAGFEIGLVVRKRILKQQDDTVDCIEVLLNEFRHVGFTVETLAASLERLGQAAADLQLRKPTYIGIDLPFQWEDVNAFVRQPDGTLFSWCER
FRCYQHMLYGIVNRTESGISLKLDGTVLVWNIREPLVQKLESEGIVKHIFPLHDEAKRKKLLRSWVLNKRNFTNQDIDDMYSYFGLKIAIYFAFLRMYAR
WIVFPALLAMIVQLVNFGSMQFLVLPVFFTSTTLWAVLFFQFWKRKNYSLISRWQINCSVTAGQGYKFLGIECTSIKTRLELLKAMGDRNREKAVYQRYE
WFGHLVRFRNNALIILGIVCLQLPFELAYAHLYEVLKSDVTKFTLTAGYIILIQYFTKLGAKLSVRLIKYENNENSQFQADSLVYKVFGLYFMQSYIGVF
YHALLHRNFLTLRQLLIQRLIIFQVLENMLEHSLPYVKYSIKKYRAVRNKKRRNSASGNKKILFQSKVEKEYLKPAYNASIGDEFEDGLFDDYLQLALQF
GMIMMFACAFPLAFVFAAVNSFTEVRTDALKLLAMFRRPVPRVAATIGAWINIYQFLIVMSICTNSVLLVCMYDQERKWQIEPGLAGILIMEHVLLLIKF
GFSQFVPEEPAWVRARRVWNAEQVQDACAKQLLKSLPSRERIPEEGNKCE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73020 unknown protein Lus10009732
[exp]
0 1
AT1G19340 Methyltransferase MT-A70 famil... Lus10032722
[exp]
1.0 0.9179
AT3G19840 ATPRP40C pre-mRNA-processing protein 40... Lus10012908
[exp]
1.4 0.9155
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Lus10034164
[exp]
3.5 0.8907
AT2G44980 ASG3 ALTERED SEED GERMINATION 3, SN... Lus10028186
[exp]
3.9 0.8850
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10027928
[exp]
3.9 0.9114
AT3G44600 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 ... Lus10006271
[exp]
4.5 0.8982
AT3G54980 Pentatricopeptide repeat (PPR)... Lus10019524
[exp]
4.9 0.9065
AT2G23890 HAD-superfamily hydrolase, sub... Lus10019962
[exp]
4.9 0.8997
AT2G04560 AtLpxB lipid X B, transferases, trans... Lus10035357
[exp]
5.9 0.9002
AT1G80150 Tetratricopeptide repeat (TPR)... Lus10019119
[exp]
6.3 0.9016

Lus10009732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.