Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16630 47 / 6e-06 ATRAD4 DNA repair protein Rad4 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024028 [exp] 90 / 2e-21 ND / Lus10004055 [exp] 60 / 3e-10 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10002285 [exp] 60 / 3e-10 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2) Lus10026719 [exp] 52 / 7e-09 ND 35 / 0.004 Lus10025507 [exp] 44 / 3e-05 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087400 [exp] 51 / 2e-07 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10405 [flax] [poplar] BHD_3 Rad4 beta-hairpin domain 3
Representative CDS sequence Show only first row Show all	>Lus10009734 pacid=23145156 polypeptide=Lus10009734 locus=Lus10009734.g ID=Lus10009734.BGIv1.0 annot-version=v1.0 ATGTCTATCCCATTGGAACATTACAAATGGTATAAGAGCTTATATCCGGCTCCCATGTCTACCGATTCACTTCCACCTTACGAACCTCCTATATTGTGTG CTGATTTTGATCTCTCTTCATGGCTCAAAGCTTGTGTTGGGTACTTCAGTGTCTTCAAAGTTCCAGCTGATGAGATGGTAGATGAAGCTCAATGGTTTCT CGAGAACAAGGCATATTATTGGTTTCTCGATTGGAAGAAGGTCCGGGACTGCATTTCAGAATTGCTATTCCTTGCTGACATGTTTTTGGTTCATCCTCTA GATGTTAATTTCTCCATGTTGTGTAGACCACCTGAGTTTGGGTTCTATTCCGAGTTTGAGCATTGGGTGCTTGATGAAAGTCCTAGGAGGCTAGTTAAGG TTGATGTGTGGTTTGAGAAGTGCATGCCACTAGAGGGTGTGGACATAAGGTTGCCAATGGTGTTTAATGTTGCCAAGAGGCTAGATATTGACTATGCACA TGGTATCATTGATGATGGTACAAGCTTGGATGATGCTTCTGAAAATCCATTCAGATTTGAATCTCCCTATTTCGAGATTAAAACTTATATGAATTCTAAA CGGCAAGGATGTCTACCATTAAGTTTTGCGAAGAAATCCTCATTTTGA
AA sequence Show only first row Show all	>Lus10009734 pacid=23145156 polypeptide=Lus10009734 locus=Lus10009734.g ID=Lus10009734.BGIv1.0 annot-version=v1.0 MSIPLEHYKWYKSLYPAPMSTDSLPPYEPPILCADFDLSSWLKACVGYFSVFKVPADEMVDEAQWFLENKAYYWFLDWKKVRDCISELLFLADMFLVHPL DVNFSMLCRPPEFGFYSEFEHWVLDESPRRLVKVDVWFEKCMPLEGVDIRLPMVFNVAKRLDIDYAHGIIDDGTSLDDASENPFRFESPYFEIKTYMNSK RQGCLPLSFAKKSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10009734 [exp]	0	1
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	16.7	0.6318
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	20.3	0.6289
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	62.6	0.5678

Compare expression of checked genes

Lus10009734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.