Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35750 95 / 1e-20 AHK2 histidine kinase 2 (.1) AT1G27320 75 / 4e-14 AHK3 histidine kinase 3 (.1) AT2G01830 72 / 2e-13 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012325 [exp] 108 / 6e-25 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 104 / 7e-24 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10003602 [exp] 78 / 3e-15 ND / Lus10028992 [exp] 76 / 1e-14 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 76 / 2e-14 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10003686 [exp] 75 / 5e-14 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 74 / 7e-14 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10015773 [exp] 73 / 2e-13 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10030772 [exp] 71 / 6e-13 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164700 [exp] 85 / 3e-17 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 78 / 3e-15 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 77 / 5e-15 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 77 / 5e-15 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 75 / 3e-14 AT1G27320 1384 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10009736 pacid=23145168 polypeptide=Lus10009736 locus=Lus10009736.g ID=Lus10009736.BGIv1.0 annot-version=v1.0 ATGTCTAGAAAGGTGTGTCTCGTTCAGATGTACAAGTTTATCATCCGCTTAGAAGATCGTGAGAACATCTCACGTGTTAGGGCATCTAGGAAGGGAGTTT TGACATCTCCTTTTAAGCTCTTGAGATCTAATCACTTGGGAGTTGTACTCACGTTTGCAGTATATAGTGTGCCTCTTCCTCCACATGGAAGGTCAGAACA ACGCGTTGAAGCTGCGATGGGGTATCCATTTCTTACGTCTGATGCGACCAATCATCTTGATATCCGTGATATGTGTTCTCCTAAACGAATTGTTTGCATA TTGCAACTATTGATTTGTATGCATTGTCATTCATCTTTCAGAATTTCACCTACTCCTGTTATATATGGATTCACTCTCCCTTCTGGCGAAACACATTCAT TGTCAGTTGATGATATTCATATGGTTTATGGTCTCCCAATGGGCAGTCTTGATGTCCCTGATGTAAGTGACATTTCGAATGTCACTTCAAATGAACTGGT TGTCCATTTTAATGTCAACCAGCAGCCTGGTGGTACATTCACCCTCAATTCAATTAAGGATGCATTAGACCATGTGCAAGACAACGATGACTGGGTTGGG TTGTTCTTTGTTGCTTATATTATGCTATCTTTGAAGAAGCAACCAAGACGTGCCACTTTTGCATCTTTAAATGATGAAGGTGTTCGTCAATTCATGAATG AATGTGTTGAGTCATACTGTAAGAAGGATGATGAAGCTCATCATCATGCTTCAAAGGATGATGAAGTTGGTGGAAAGGGAAAAGGCCAGAAGAAGAAGAG GCATGATGTTGATGAGATTGTTTCCTCTCTTAAAAAACAATGGGTTGTCTTTATGTCCCCTCAGATTAAAATCAACAACGTTGCTGGCAAAGTATGTTGT TTTGGAGAAGGAACTAGATGGATTCATGTTGGTCCCGGGGGGGCAACAGCTCTGCTTCTGGTCTACAAATTGACATGTTTGTTGCTGTTAGTGAAACCGT TCCTATTATGGATGAAGAAGAAGTGGAAAAGAGTGATGGGGAAGGCGGTAGCAATGAAGATCAAGACACCAGAGCAGGCTATGCGTTCTTTCTGTGTCGG TTTGGCCTCCTTGTACGAGTGTGGTGGACCGGACGAGCTCGTTAACTGCGCCGGAGGGCGACAGACGGGAGCAGCGGGCAGCAGNGCAGCGGGCAGCAGA GGCGACGATATCGTCAGCGGTGAGATAGCGGTAGAGGGCGGCGGCGGCAAAATGGCGGTATAA
AA sequence Show only first row Show all	>Lus10009736 pacid=23145168 polypeptide=Lus10009736 locus=Lus10009736.g ID=Lus10009736.BGIv1.0 annot-version=v1.0 MSRKVCLVQMYKFIIRLEDRENISRVRASRKGVLTSPFKLLRSNHLGVVLTFAVYSVPLPPHGRSEQRVEAAMGYPFLTSDATNHLDIRDMCSPKRIVCI LQLLICMHCHSSFRISPTPVIYGFTLPSGETHSLSVDDIHMVYGLPMGSLDVPDVSDISNVTSNELVVHFNVNQQPGGTFTLNSIKDALDHVQDNDDWVG LFFVAYIMLSLKKQPRRATFASLNDEGVRQFMNECVESYCKKDDEAHHHASKDDEVGGKGKGQKKKRHDVDEIVSSLKKQWVVFMSPQIKINNVAGKVCC FGEGTRWIHVGPGGATALLLVYKLTCLLLLVKPFLLWMKKKWKRVMGKAVAMKIKTPEQAMRSFCVGLASLYECGGPDELVNCAGGRQTGAAGSXAAGSR GDDIVSGEIAVEGGGGKMAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	2.2	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	2.4	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	3.5	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	3.9	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	4.0	1.0000
					Lus10002413 [exp]	4.0	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	4.2	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	4.5	1.0000
					Lus10001326 [exp]	4.9	1.0000
					Lus10003843 [exp]	4.9	1.0000

Compare expression of checked genes

Lus10009736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.