Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 448 / 1e-157 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT1G51780 415 / 9e-145 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 390 / 8e-135 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT5G56660 390 / 9e-135 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G44350 320 / 6e-107 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 304 / 6e-101 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 297 / 1e-98 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037601 [exp] 506 / 2e-180 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10006864 [exp] 436 / 5e-153 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 371 / 2e-127 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 371 / 2e-127 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 355 / 8e-121 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10010715 [exp] 352 / 1e-119 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10025668 [exp] 323 / 2e-108 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10032963 [exp] 310 / 1e-103 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10016998 [exp] 305 / 4e-101 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045200 [exp] 486 / 1e-172 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 370 / 3e-126 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 367 / 2e-125 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 360 / 9e-123 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.012G007400 [exp] 319 / 4e-107 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.016G074100 [exp] 317 / 1e-105 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 310 / 2e-103 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 310 / 3e-103 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207300 [exp] 303 / 1e-100 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10009737 pacid=23145165 polypeptide=Lus10009737 locus=Lus10009737.g ID=Lus10009737.BGIv1.0 annot-version=v1.0 ATGGTTGGTGTCAGAAGGAAGATACATGAGAATCCTGAACTAGGTTATCGAGAATTTGAGACTAGTAAGCTGATTAGAGCTGAGTTGGACAAAATTGGGG TTGAGTACAAATACCCAGTAGCTCATACTGGTGTTGTTGGGTTTATTGGGACTGGCGATCCTCCTTTTGTTGCAATACGGGCTGATATGGATGCTCTTTC TATGCAGGAAATGGTAGAGTGGGAGCACAAGAGTAAGGTACCTGGAAAGATGCATGCTTGTGGCCATGATGCTCATGTCGCGATGCTCCTCGGAGCAGCA AAGATCCTTCAAGAACATCGGGATGATTTGAAGGGCACAGTTGCTCTGGTCTTTCAACCGGCTGAGGAAATAGGAGGTGGAGCAATGGATATGATAGATG CAGGAGCCTTAGAAAATGTGAATGCAATCTTTGCTGTAATTGGAGGAAAAGGCGGCCATGCTGCCATTCCGCAGCATTCTATAGATCCAATCCTGGCGGC TTCTAACATTATTGACAGCTTACAACATCTTGTTTCCCGTGAAGCTGATCCACTAGACTCGCAGGTTGTTACAGTGACCATATTCCAAGGCGGTGGTGCT CTCAATGTCATTCCAGATTCTGTGACAATTGGGGGCACTTTCCGAGCCTTGTCGAAAGAAAGCTTTAATCAACTTAAGCAGCGTATTGAGGAGGTTATCA AGGGGCAGGCCACTGTTCAAAGGTGTAAAGCAAGCATCCATTTCCTTAAACAAGATCCTCCAACAGTGAATGACAAAGATCTGCATGACTACTTCAAAAC TGTTGCCATAAATATGCTCGGTGCTGATAAAGTTAGAGAGATGCAACCTCTGATGGGAGCTGAGGATTTTTCATTCTACCAACAAGTTGTTCCTGGCTAC TTCTTCTTCATGGCATGTATAATGAGACACAGAAGCAGCTTGAATCAGAGCACTCGCCCTACTTTGAAGTAA
AA sequence Show only first row Show all	>Lus10009737 pacid=23145165 polypeptide=Lus10009737 locus=Lus10009737.g ID=Lus10009737.BGIv1.0 annot-version=v1.0 MVGVRRKIHENPELGYREFETSKLIRAELDKIGVEYKYPVAHTGVVGFIGTGDPPFVAIRADMDALSMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAA KILQEHRDDLKGTVALVFQPAEEIGGGAMDMIDAGALENVNAIFAVIGGKGGHAAIPQHSIDPILAASNIIDSLQHLVSREADPLDSQVVTVTIFQGGGA LNVIPDSVTIGGTFRALSKESFNQLKQRIEEVIKGQATVQRCKASIHFLKQDPPTVNDKDLHDYFKTVAINMLGADKVREMQPLMGAEDFSFYQQVVPGY FFFMACIMRHRSSLNQSTRPTLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10009737 [exp]	0	1
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	4.5	0.8371
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	5.7	0.8394
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	9.8	0.8337
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	12.0	0.8341
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	12.5	0.8415
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	13.7	0.8295
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	19.0	0.8203
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	19.3	0.7996
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	25.6	0.8388
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	30.0	0.7966

Compare expression of checked genes

Lus10009737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.