Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21310 455 / 3e-160 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 454 / 1e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 434 / 1e-151 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 426 / 7e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 354 / 4e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 337 / 1e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 287 / 5e-94 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 285 / 6e-93 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 277 / 5e-90 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 278 / 1e-87 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003499 [exp] 677 / 0 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 446 / 3e-156 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 446 / 3e-156 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 447 / 2e-154 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 335 / 1e-112 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 335 / 1e-112 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 335 / 3e-112 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 335 / 3e-112 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 329 / 3e-110 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195900 [exp] 500 / 4e-178 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 466 / 3e-164 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 457 / 4e-161 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 363 / 1e-123 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 338 / 3e-114 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 338 / 4e-114 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 333 / 3e-112 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 331 / 3e-111 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 330 / 3e-111 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 331 / 5e-111 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10009738 pacid=23145154 polypeptide=Lus10009738 locus=Lus10009738.g ID=Lus10009738.BGIv1.0 annot-version=v1.0 ATGATGGCATTGGAGGAAGGCAAGGATCATGGAAGAGTTAATCCAACTACTAGGCCCTTGCCTTTGAAACTCCTCCAGTTTCTCTTGGTCTTTCTGGGAT TTGGTCTTGGCATTTCTGTTGTCACCATGTTCGCGGCTCGGTATGTTGGAGCTCCAAAATTTTCTGCGATGGAAAGGCAAAACTTTGTGGTGCCATCTCC GTTGGGTTTGCCCATCCTTAGAGAAGAGCCGTATACATTGGAGAAGTGGACTAGGCCACCAGCAAATTTGATGCACCGTATGAATGACAATGAGTTGTTG TGGCGTGCTTCGTTTGTTCCTCGTATCAAAGAGTATCCTTTCAACAGGGTTCCCAAAATTGCCTTCATGTTCTTGACAAAAGGCCCACTGCCCTTGGCAC CTCTTTGGCAGAGGTTTTTCCATGGGCAGCAGGGTTTTTATTCTATCTATGTTCATGCTTTGCCACATTATGTCTCCAACTTCTCTTCATCATCAGTATT CTACAATAGACAAATCCCAAGTCAGACAGTTGAATGGGGGAAAATGAGCATGTGTGAAGCTGAGAGGAGACTCCTCGCTAATGCCTTAATTGATATATCC AATGAATGGTTTGTTTTAGTGTCTGAGGCATGCATTCCTCTCCAAAACTTCAGCATCATATACCGTTACATATCCAGATCAAGGTATAGCTTCATGGGTT CATTTGATGAACAAGGTCCATATGGTAGAGGACGTTATAACGAGAATATGCAACCAGAGGTGACACTTGAACAATGGCGCAAAGGGTCTCAATGGTTTGA AGTGAACCGAAGACTTGCCCTTGATATTGTAGTGGACACTAAATACTACCCTAAATTCCGGGATTTCTGCCAACCAGCATGTTATGTAGACGAACATTAC TTCCCTACAATGCTGAGCATCACAGTGCCACAACTATTAGCAAACAGAACTCTCACATGGACAGATTGGTCCAGGGGCGGAGCTCATCCAGCTACTTTTG GCAAGTCTGACATCACAGAGCAATTCTTCAGGAAAGTGTTTCAAGGGCAGTCCTGCCTTTACAACAACCAGCCATCCACGCTTTGCTTTCTCTTTGCTAG AAAGTTTGCTCCCAGTGCTTTGGAACCTCTTCTGAAACTATCCTCCAGATTTTTAGGGTATTGA
AA sequence Show only first row Show all	>Lus10009738 pacid=23145154 polypeptide=Lus10009738 locus=Lus10009738.g ID=Lus10009738.BGIv1.0 annot-version=v1.0 MMALEEGKDHGRVNPTTRPLPLKLLQFLLVFLGFGLGISVVTMFAARYVGAPKFSAMERQNFVVPSPLGLPILREEPYTLEKWTRPPANLMHRMNDNELL WRASFVPRIKEYPFNRVPKIAFMFLTKGPLPLAPLWQRFFHGQQGFYSIYVHALPHYVSNFSSSSVFYNRQIPSQTVEWGKMSMCEAERRLLANALIDIS NEWFVLVSEACIPLQNFSIIYRYISRSRYSFMGSFDEQGPYGRGRYNENMQPEVTLEQWRKGSQWFEVNRRLALDIVVDTKYYPKFRDFCQPACYVDEHY FPTMLSITVPQLLANRTLTWTDWSRGGAHPATFGKSDITEQFFRKVFQGQSCLYNNQPSTLCFLFARKFAPSALEPLLKLSSRFLGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	0	1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	2.2	0.8879
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10021169 [exp]	5.7	0.8481
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	6.0	0.8735
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	6.6	0.8586
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032066 [exp]	10.6	0.8142
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	11.0	0.8487
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	13.0	0.8444
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	13.7	0.8525
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	13.8	0.8559
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	15.1	0.8463

Compare expression of checked genes

Lus10009738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.