Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44270 608 / 0 ROL5 repressor of lrx1 (.1.2) AT1G76170 560 / 0 2-thiocytidine tRNA biosynthesis protein, TtcA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083500 [exp] 619 / 0 AT2G44270 655 / 0.0 repressor of lrx1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01171 [flax] [poplar] ATP_bind_3 PP-loop family
Representative CDS sequence Show only first row Show all	>Lus10009739 pacid=23145157 polypeptide=Lus10009739 locus=Lus10009739.g ID=Lus10009739.BGIv1.0 annot-version=v1.0 ATGGAGAAAAGCAACACTATGCTCAAGAAGACCGGTGTTCGATTGTGTTGTCTTTGCAATGAGAGCAAGGCTGCTCTCAAAAGGCCTAAAACGCTAGAAC AGATATGCAGGGAATGTTTCTACGAGGTATTTGAAGAAGAAATTCACCAAGTAATAGTAGACAACCACTTATTCAAGCATGGTGAACGTATCGCTATCGG TGCTTCGGGAGGAAAAGACTCCACTGTCCTTGCCTATGTATTGTCAGAACTAAATCGCAGGCATTGTTATGGCCTGGATTTGTTCCTCTTGTCCGTTGAT GAAGGCATCACAGGATATAGGGACGATTCTCTAGAGACAGTCAAAAGAAATGAAATCCAGTATGGTCTACCATTAAAGATAGTATCATACAAGGAGTTAT ATGGATGGACAATGGATGAGATTGTGAAGGTGATTGGTCTGAAGAATAATTGCACATTTTGTGGTGTTTTCCGACGTCAGGCACTTGATCGGGGTGCTGC ATATCTGAAAGTAGACAAGCTCGTTACCGGGCATAATGCAGATGATATTGCTGAAACAGTGCTCCTCAACATACTACGTGGTGATGTTGCTAGATTGAGT AGATGCGCTTCAATCACAACAGGGGAAGACGGACCTATTCCAAGATGCAAGCCATTTAAATTATCATTGGAAAGCCTTAACCAGAAGCAAACGTATGCTT ATTTTAAGAAGCTGGACTACTTTTCTACTGAATGCATTTACTCTCCGAACGCTTATCGTGGGTTTGCTCGTGAGTTCATAAAGGATTTGGAAAGAATGAG GCCTAGGGCCATTGTTGACATAATCAAGTCTGGAGAGAATTTCAGGATTTCAACTTCGACAAAAATGCCTGAACAAGGGACATGTGAACGATGTGGCTAT ATATCAAGCCAGAAATGGTGCAAGGCTTGTGTTCTACTAGAGGGACTGAACCGGGGACTGCCCAAGTTGGGAATTGGACGAAGTCCGCGTGTGGAGAATA GCAGTGAACAAGGGAAGGAGATGAAGCAAAATGAGAGGGTGAAGAGTATAGAGAACAAGCAATGTGGGAGCTTGGAGTTTTGA
AA sequence Show only first row Show all	>Lus10009739 pacid=23145157 polypeptide=Lus10009739 locus=Lus10009739.g ID=Lus10009739.BGIv1.0 annot-version=v1.0 MEKSNTMLKKTGVRLCCLCNESKAALKRPKTLEQICRECFYEVFEEEIHQVIVDNHLFKHGERIAIGASGGKDSTVLAYVLSELNRRHCYGLDLFLLSVD EGITGYRDDSLETVKRNEIQYGLPLKIVSYKELYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGAAYLKVDKLVTGHNADDIAETVLLNILRGDVARLS RCASITTGEDGPIPRCKPFKLSLESLNQKQTYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERMRPRAIVDIIKSGENFRISTSTKMPEQGTCERCGY ISSQKWCKACVLLEGLNRGLPKLGIGRSPRVENSSEQGKEMKQNERVKSIENKQCGSLEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	2.2	0.9430
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	3.0	0.9414
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	4.2	0.9400
					Lus10006087 [exp]	4.9	0.9411
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	5.1	0.9426
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	8.5	0.9220
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	8.8	0.9286
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	8.9	0.9409
AT3G12300			unknown protein		Lus10005383 [exp]	9.5	0.9313
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	11.4	0.9257

Compare expression of checked genes

Lus10009739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.