Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21300 770 / 0 RNA methyltransferase family protein (.1) AT2G28450 81 / 6e-16 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G27180 45 / 8e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000172 [exp] 491 / 2e-173 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10041301 [exp] 85 / 1e-16 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10037411 [exp] 84 / 1e-16 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195300 [exp] 827 / 0 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1) Potri.001G194701 [exp] 124 / 2e-34 AT3G21300 123 / 8e-35 RNA methyltransferase family protein (.1) Potri.009G013000 [exp] 81 / 8e-16 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.001G331900 [exp] 45 / 0.0002 AT3G27180 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05958 [flax] [poplar] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009743 pacid=23145167 polypeptide=Lus10009743 locus=Lus10009743.g ID=Lus10009743.BGIv1.0 annot-version=v1.0 ATGGCAACCACGGTACCAACCCATTGCTTCAGGAAATTACCTATGGGTAAGCCATTACTCCACAGATTTTCCAAACATGGACGAAACTTCAATTCTGTCG TGGCCTCTCTGTCTAACCAGCAGGAGCAGGAGCAGACCATGAAGTCGGAAAGTGGCTATAAGCTTAGTAGCGATGTTACTGGAAAGCGCAGTTCTTATTT CCCAAAGAGAGGCCAAACAATAGAGTTGGTGTGTGAGTCATTGGCATTTAAGGGGGTTGGTATATGCAAAGTGGAGGAGACTGGGGTTGTTGTCATGTGT AATCGTGCACTGCCTGGCGAGAGATTCATTGGAAGGGTTACACGCAGAAAGGGAAGTTATGCAGAGGTGACCAAGGTGGAGACAATTTCTTCTCATTGGG ATAGTGTTGAAGCCCCTTGTGAGTATGCTGGTCATTGTGGAGGCTGCAAAACACAAAATCTGTCTTATGATGCTCAGCTCAGAGCTAAGGAACAGCAAGT TCGCGAGCTAATGATTCATGTTGGCAAGTTTTCTAGTGAAATCTCTGAATCTGGCATCATGAAGCCCATTGTTCCATGTCATATTCGATTCCATTATAGA AATAAGATGGAATTCTCTTTTGGTTCAAGAAAATGGTTGCCGGTAGAGTTGTTGGGAGAGAAACAACAAGGCACTGACAACTATGCCTTGGGACTGCACG CTCCTGGCTTTTTCGATAAAGTTCTCAATGTTGACAAATGCTTGTTACAAAGTGAGCCTGCTAATGCGGTACTGGAAGCCGTCCAAGATTGTTGGAGAGA TCCACAGTTAGGTCTTACTCCTTATGATGTTCACTCACATAATGGATTTCTTAAGCATCTAATGTTAAGAACTGGAAGGAGTGCAGACACTGGTTCTCTT GAGATTATGGTTAACTTGGTGACATCTTCTTACAAGCTGGACCTGCTGAATCCCCTGGTTGAAAAGATTTCAGCTATTCCAGAAGTGGTAAGCATTGTGA ATAATGTAAATTCTTCCGTTGGCAACACATCTGTTGGGGAGATGGAGTACACTCTTCATGGAAGGTCTACCATCACAGAGACTTTGAGAGGTCTAACCTT CCAGATTTCTGCTAATTCATTCTTCCAAACAAACACTAGTCAGGCAGAGGTTCTCTATAAACTCATTGAAGACTGTGCTGAACTTAGAGGAGATGGCTCA GAGATCGTTCTTGACCTTTTCTGTGGAACAGGCACCATTGGTCTGACGCTGGCAAGAAAGGCGAAACATGTGTATGGCTATGAAGTAGTTCCTCAGGCTA TATCAGATGCTCAAACAAATGCTAAGTTGAATAACATCAGTAATGCCACCTTTGTCCAAGGGGATCTTAACAAGATCAGTGAAAATTTTGGCAGTGATTT TCCGAAGCCCGATCTTGTTATTTCAGATCCAAACCGTCCTGGAATGCATATGAAGCTGATCAAGTTTCTACTCAAGCTTAGAGCACCTCGTATTGTCTAT GTATCCTGTAACCCTTCCACTTGTGCTCGTGATCTGGATTACCTTTGCCATGGGGTGAAGGAGAAGAACATAGAAGGAAGTTACAAAGTGAAAAGCATAC ACCCGGTGGACATGTTCCCTCATACTCCTCATATCGAATGTGTTTGTCTACTCGAACTTGACTCGACTTCATAA
AA sequence Show only first row Show all	>Lus10009743 pacid=23145167 polypeptide=Lus10009743 locus=Lus10009743.g ID=Lus10009743.BGIv1.0 annot-version=v1.0 MATTVPTHCFRKLPMGKPLLHRFSKHGRNFNSVVASLSNQQEQEQTMKSESGYKLSSDVTGKRSSYFPKRGQTIELVCESLAFKGVGICKVEETGVVVMC NRALPGERFIGRVTRRKGSYAEVTKVETISSHWDSVEAPCEYAGHCGGCKTQNLSYDAQLRAKEQQVRELMIHVGKFSSEISESGIMKPIVPCHIRFHYR NKMEFSFGSRKWLPVELLGEKQQGTDNYALGLHAPGFFDKVLNVDKCLLQSEPANAVLEAVQDCWRDPQLGLTPYDVHSHNGFLKHLMLRTGRSADTGSL EIMVNLVTSSYKLDLLNPLVEKISAIPEVVSIVNNVNSSVGNTSVGEMEYTLHGRSTITETLRGLTFQISANSFFQTNTSQAEVLYKLIEDCAELRGDGS EIVLDLFCGTGTIGLTLARKAKHVYGYEVVPQAISDAQTNAKLNNISNATFVQGDLNKISENFGSDFPKPDLVISDPNRPGMHMKLIKFLLKLRAPRIVY VSCNPSTCARDLDYLCHGVKEKNIEGSYKVKSIHPVDMFPHTPHIECVCLLELDSTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	0	1
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	1.0	0.9483
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	3.5	0.9089
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	3.7	0.9013
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	4.9	0.9182
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	5.5	0.9065
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	5.5	0.8940
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	6.2	0.9271
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	6.9	0.9021
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	9.2	0.8282
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	10.4	0.8887

Compare expression of checked genes

Lus10009743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.