Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47200 97 / 8e-26 WPP2 WPP domain protein 2 (.1) AT5G43070 94 / 5e-25 WPP1 WPP domain protein 1 (.1) AT5G27940 52 / 9e-09 WPP3 WPP domain protein 3 (.1) AT3G63130 48 / 5e-07 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 44 / 2e-05 RANGAP2 RAN GTPase activating protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010235 [exp] 187 / 1e-61 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10042643 [exp] 124 / 8e-37 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10010523 [exp] 51 / 6e-08 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10034066 [exp] 51 / 7e-08 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10014670 [exp] 46 / 3e-06 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10006930 [exp] 46 / 3e-06 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021900 [exp] 115 / 7e-33 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 106 / 1e-29 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.010G091100 [exp] 53 / 1e-08 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.005G209600 [exp] 47 / 2e-06 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.002G052900 [exp] 44 / 1e-05 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009747 pacid=23178322 polypeptide=Lus10009747 locus=Lus10009747.g ID=Lus10009747.BGIv1.0 annot-version=v1.0 ATGTCTGACTCCGATGTAACTGCCGCCGTTCCATCGGCAGATCCTATCGTATCACCGCCGGAAGAGAAGCCGACGCCTGCTAGAGTACCGAAGGCTCTCA ACATTTGGCCTCCTTCCCAGCGCACTCGCGACGCCGTCGTTTCTCGCTTAATCGAGACCTTATCTACTCCTTCCGTACTCTCCAAGCGCTACGGAACGCT TCCCCAGGAAGAGGCCTCTGAAGCCGCTCGCCGAATCGAGGAGGAAGCCTTTAGCGCCTCCAACGACTCTGCTTCTACCGAGGACGAGGGCCTCGAGATC CTCCAGCGTTATTCTAAGGCGATCAGCAAGCGAATGCTGAATACCGTCAAGGCTCACTCCGCTACTGCTACTGCGACCGATAATATTTCTCCGGAGACGC CCCCTGTTGATGTTCTTCCTGCTGAATCTGCTCCTGAAGAAGTTCCGGCTTCTGAAAAGGCTCGAGCTTGA
AA sequence Show only first row Show all	>Lus10009747 pacid=23178322 polypeptide=Lus10009747 locus=Lus10009747.g ID=Lus10009747.BGIv1.0 annot-version=v1.0 MSDSDVTAAVPSADPIVSPPEEKPTPARVPKALNIWPPSQRTRDAVVSRLIETLSTPSVLSKRYGTLPQEEASEAARRIEEEAFSASNDSASTEDEGLEI LQRYSKAISKRMLNTVKAHSATATATDNISPETPPVDVLPAESAPEEVPASEKARA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	0	1
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	1.4	0.9176
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	2.2	0.8738
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	3.5	0.8974
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	4.2	0.9160
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	4.6	0.8723
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	6.0	0.8724
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	6.0	0.8673
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	6.6	0.8776
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	6.7	0.8427
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	9.5	0.8394

Compare expression of checked genes

Lus10009747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.