Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 575 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G05920 491 / 2e-163 Subtilase family protein (.1) AT3G14240 484 / 2e-160 Subtilase family protein (.1) AT5G67360 483 / 3e-160 ARA12 Subtilase family protein (.1) AT4G34980 471 / 2e-155 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 466 / 3e-153 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 463 / 4e-152 Subtilase family protein (.1) AT1G04110 451 / 1e-147 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 435 / 1e-141 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 382 / 5e-121 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 1068 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 820 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 620 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 593 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 549 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 526 / 7e-178 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 508 / 2e-169 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 506 / 2e-168 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10041382 [exp] 490 / 1e-162 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124500 [exp] 847 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 842 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 803 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 741 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 570 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 537 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 506 / 8e-169 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 503 / 9e-168 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G163600 [exp] 503 / 1e-167 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 488 / 4e-162 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10009748 pacid=23178324 polypeptide=Lus10009748 locus=Lus10009748.g ID=Lus10009748.BGIv1.0 annot-version=v1.0 ATGGCCTCCTATACAATGCATTCCAATGTGCTTGCTTTCATCTCTACCGTTTTCCTCATCACCATATCTCTCATTATAATTCCTTCTTCCCTCGCCTTTT CCGAGCTTGACCATTACATTGTTTTCATGGACTCAACTTCCATGCCAAAAGCCTTCTCTACTCAACAAAACTGGCACTTAGCCACTCTTTCCTCTCTCTC ACAAACTCCCCATTCCAAGCTTATCTACAGCTACTCTCATGTCATCCATGGGTTTAGTGCTACTTTAACTTCTTCTGAACTTGACACTCTCAAAAACACT CCTGGTTACCTTTACTCAATCAAGGATTTACCCGTTCAACACGACACTACTCATTCAACCCAATTCCTCGGCCTTACAGCTTCATCAGCAGCATGGAAGC TTACCAATTATGGCGAAGGAATGATCATCGGTGTCATCGATTCTGGGGTCTGGCCAGAGAGCAAGAGCTACAACGACCAAGGGATGCCTCCTGTGCCTGC AAGATGGAGAGGAGAATGCGAAACAGGAACCCAATTCAACACATCTTTGTGCAATAACAAACTCATCGGCGCTCTATCCTTTAAACAAGGTCTCATTGCT AGAAACATAACCGTGGGGATGAACTCACCTCGAGACACAGGCGGCCACGGCACCCACACCTCTAGCACCGCCGCTGGTAACTTCGTCGACGGCGCCTCTT ACTTCGGCTACGCTCCGGGGACTCTCAAGGGAGTGGCTCCCAAGGCTCACGTCGCCATATACAAGACCCTATTTGATGAAGGCGGTTTCTCTTCCGCTCT CATTGCGGCAATTGATCGAGCACTTGGCGACGGTGTTGATGTGCTCTCCATTTCCCTAGGGTTAACCGGCCCACCTCTCTACGCCGATCCAATCGCGTTG GCTACATTCGCCGCCGTAGAGAAGAACGTGTTCGTCGCCACTTCCGCTGGGAACAACGGCCCCTCAATCCGCTCCCTCCACAACGGCACTCCCTGGGTGT TGACCGTCGCTGCCGGATCCATTGACCGCGACTTCAAAGCAGAGGTGAAACTAGGCAACGGAGTCTCCGTGTTTGGATCTTCTCTCTACCCGGGAAACTA TTCCGCTGACGAAGCTCCGATCGTCTTCATGGGAGATTGCGAGAACGGGACAGAAATTAGCAAACTCGTGAACAAAATCGTGGTGTGCGAGGAGAAAGAC TTCAATCTGAGAGACCAATTAGGAAACGTCCGGAACTCCTCCGGGATAATCGGAGGCGTTTTCATCACCAACGCGACTTCATCGGAGCTGGAATTCTACA TCCAATCTCCATTTCCAGCGGTTTACTTGACAGTTAAAGACGGCGAGACTGTGAAAGACTACATCAAGAGCAACACCGAAGAAGAAGCTGGAGCAAGCTT GAAATTCGGGATTACTGACCTTAACGTGAGACCAGCACCGGCTGTAGCGAGTTACAGCTCCAGGGGACCATCTCCAAGCTGCCCATCAGTGATGAAGCCA GACATAATGGGACCAGGCTCATTCATCCTAGCAGCTTGGCCTTCCGATGTAGAAGCGGCGGAGGTGGTAATTGGAAATTCCAACAACCCTTTGTACACTG ATTTCAATCTCTTGTCCGGTACGTCCATGTCCTGTCCACATTTAGCAGGAGTCGGTGCGCTTATTAAGAAGGCCCATCCAGATTGGAGCCCAGCTTCCAT CAGATCAGCCATCATGACAACCGCCGATTCGATGGATCTCTCAGGACGGCCCATTCAAGATTCGGGTGATGATGAACGTGGGCCAGCAACGGGTCTGGCA ATGGGGGCGGGTCAGGTTAACCCGAACAGAGCATTGGATCCGGGTCTTGTATATGATGTCACCACATCTGATTATGTCAACCTGCTTTGTGGTTTAAATT TCGACCTGAACCAAATCAAAGCCATTACACGATCTACCGTAAATGACTGCTCAAGCCCGTCGTTGGACCTCAATTATCCTTCATTTATTGCATTTTTCGA TGCGAATTACTCGAGTGGTTCCCAGCCTAATCAGGTTCTAGAGTTTTGTAGGACGTTGACGAATGTTGGAGATGCAGTGGCGAGTTATACAGCGAGTCTT ACACCCTTGGATGGTATGTTTGTTAGTGTAGTACCAGAGAAGCTGGAGTTCAAAGCTAAAGGGGAAAAACTTAGCTTCAAGCTTGTGTTAGAAAGTGATC ATTCGGTGATGATGAAACCTTTTCTGAATTCTGGTTATCTTAAGTGGATCGAAGATGGAGGCAATCATGTTGTCCAAAGTGCCATGGTGGCCACCAACTT GGACTTGTCGGGATTTGTATCTCAAAACAATTGA
AA sequence Show only first row Show all	>Lus10009748 pacid=23178324 polypeptide=Lus10009748 locus=Lus10009748.g ID=Lus10009748.BGIv1.0 annot-version=v1.0 MASYTMHSNVLAFISTVFLITISLIIIPSSLAFSELDHYIVFMDSTSMPKAFSTQQNWHLATLSSLSQTPHSKLIYSYSHVIHGFSATLTSSELDTLKNT PGYLYSIKDLPVQHDTTHSTQFLGLTASSAAWKLTNYGEGMIIGVIDSGVWPESKSYNDQGMPPVPARWRGECETGTQFNTSLCNNKLIGALSFKQGLIA RNITVGMNSPRDTGGHGTHTSSTAAGNFVDGASYFGYAPGTLKGVAPKAHVAIYKTLFDEGGFSSALIAAIDRALGDGVDVLSISLGLTGPPLYADPIAL ATFAAVEKNVFVATSAGNNGPSIRSLHNGTPWVLTVAAGSIDRDFKAEVKLGNGVSVFGSSLYPGNYSADEAPIVFMGDCENGTEISKLVNKIVVCEEKD FNLRDQLGNVRNSSGIIGGVFITNATSSELEFYIQSPFPAVYLTVKDGETVKDYIKSNTEEEAGASLKFGITDLNVRPAPAVASYSSRGPSPSCPSVMKP DIMGPGSFILAAWPSDVEAAEVVIGNSNNPLYTDFNLLSGTSMSCPHLAGVGALIKKAHPDWSPASIRSAIMTTADSMDLSGRPIQDSGDDERGPATGLA MGAGQVNPNRALDPGLVYDVTTSDYVNLLCGLNFDLNQIKAITRSTVNDCSSPSLDLNYPSFIAFFDANYSSGSQPNQVLEFCRTLTNVGDAVASYTASL TPLDGMFVSVVPEKLEFKAKGEKLSFKLVLESDHSVMMKPFLNSGYLKWIEDGGNHVVQSAMVATNLDLSGFVSQNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	0	1
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	1.0	0.9526
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040064 [exp]	3.5	0.9185
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	4.2	0.9056
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	5.2	0.9256
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	5.3	0.9209
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	7.1	0.9313
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040065 [exp]	7.7	0.8870
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	8.4	0.9186
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	9.2	0.8807
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	10.6	0.9107

Compare expression of checked genes

Lus10009748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.