Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42860 211 / 5e-67 unknown protein AT1G45688 208 / 2e-65 unknown protein AT4G35170 155 / 3e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 121 / 2e-32 unknown protein AT3G24600 95 / 9e-22 Late embryogenesis abundant protein, group 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010232 [exp] 332 / 3e-114 AT1G45688 416 / 3e-146 unknown protein Lus10029743 [exp] 214 / 8e-68 AT1G45688 301 / 4e-101 unknown protein Lus10022644 [exp] 167 / 7e-50 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010231 [exp] 157 / 2e-48 AT5G42860 84 / 1e-20 unknown protein Lus10025793 [exp] 138 / 1e-38 AT1G45688 221 / 5e-70 unknown protein Lus10035869 [exp] 137 / 5e-38 AT1G45688 219 / 3e-69 unknown protein Lus10003341 [exp] 130 / 3e-35 AT2G41990 221 / 4e-70 unknown protein Lus10023652 [exp] 129 / 3e-35 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 129 / 3e-35 AT1G45688 182 / 5e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026800 [exp] 242 / 8e-79 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 237 / 5e-77 AT1G45688 284 / 1e-94 unknown protein Potri.007G045000 [exp] 223 / 3e-71 AT1G45688 273 / 4e-90 unknown protein Potri.009G140600 [exp] 164 / 1e-48 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 163 / 3e-48 AT2G41990 256 / 1e-84 unknown protein Potri.006G160100 [exp] 139 / 5e-39 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.001G183600 [exp] 139 / 5e-39 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 137 / 4e-38 AT1G45688 176 / 6e-53 unknown protein Potri.009G061300 [exp] 72 / 2e-14 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 68 / 9e-13 AT3G08490 196 / 6e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009749 pacid=23178334 polypeptide=Lus10009749 locus=Lus10009749.g ID=Lus10009749.BGIv1.0 annot-version=v1.0 ATGGTGAGAAGACCACCACTTCCTTCCATTCCACCCCTGTCATCAGCCCTATGGGCTCCCCGCCTCACTCCCACTCTTCCGTCGGCCGCCACTCTCGCGA ATCCTCCTCCACCAGGTTCTCCGGCTCTCTCAAGCCTGGATCTAGGAAGATCTCCCCCAACGATGCCTCCAGAGGCGGCGGCGGCGGCGGACACCGGGAA GGGGAAGAGGAGCAGCGGGAGGGGCGCGGGGTGGATGAGGGAGGACGGCGTCTCGAGGCTTCTCGAGGATGAAGATCGGGAGAGAGGAATCCCTCGCCGT TGCTATTTCCTTGCCTTTGTGCTTGCGTTCATCCTTCTCTTCTCTATGTTCTCCTTGATTCTCTGGGGCGCTAGCAGACCTCAGAAGCCCAAGATCTCGA TGAAGAGCATTAAGTTCGAGCATTTCAGCATCCAAGCTGGATCCGATGCATCCGGAGTAGCAACTGATATGATCACAGTCAACTCCACTGTGAAGATGAT CTATCGAAACACTGGAACTTTCTTCGGAGTTCACGCGACTACGACGCCCGTGGATCTGTCCTACTCTCAAATCGCGATTGCTTCCGGAACGATGAAGAAG TTTTATCAGAAGAGAAGTAGCCAGAGATCGGTGGCGATATCGATCGGCGGGGATAAGATCCCGATGTACGGAAGCGGAGCAGGACTGAGCAGTACGGCAA CAGGAAGGCCGTTGCTGCCGGTTCATCTGACGCTCAACTTCACAGTGAAATCAAGAGCCTACGTTCTTGGGAAATTGGTGAAGCCGAGATTCTACAAGAC GATTGGATGCGACATTACATTCGATCCAAAGAAGCTTAACGCCACAATCTCGCTGAAGAACGCCTGCACATACGGCTGA
AA sequence Show only first row Show all	>Lus10009749 pacid=23178334 polypeptide=Lus10009749 locus=Lus10009749.g ID=Lus10009749.BGIv1.0 annot-version=v1.0 MVRRPPLPSIPPLSSALWAPRLTPTLPSAATLANPPPPGSPALSSLDLGRSPPTMPPEAAAAADTGKGKRSSGRGAGWMREDGVSRLLEDEDRERGIPRR CYFLAFVLAFILLFSMFSLILWGASRPQKPKISMKSIKFEHFSIQAGSDASGVATDMITVNSTVKMIYRNTGTFFGVHATTTPVDLSYSQIAIASGTMKK FYQKRSSQRSVAISIGGDKIPMYGSGAGLSSTATGRPLLPVHLTLNFTVKSRAYVLGKLVKPRFYKTIGCDITFDPKKLNATISLKNACTYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42860			unknown protein		Lus10009749 [exp]	0	1
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	1.0	0.8907
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	1.7	0.8748
AT1G45688			unknown protein		Lus10010232 [exp]	2.4	0.8764
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	6.8	0.7945
AT5G38700			unknown protein		Lus10010019 [exp]	8.0	0.8026
AT5G66580			unknown protein		Lus10019659 [exp]	9.2	0.7724
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	10.0	0.7609
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	11.6	0.8591
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	13.1	0.8674
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	15.9	0.8455

Compare expression of checked genes

Lus10009749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.