Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45207 373 / 1e-122 Remorin family protein (.2) AT4G36970 120 / 3e-29 Remorin family protein (.1) AT1G53860 52 / 7e-07 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010227 [exp] 945 / 0 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10005708 [exp] 653 / 0 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10042649 [exp] 630 / 0 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10027302 [exp] 195 / 2e-56 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10039007 [exp] 186 / 2e-53 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10003936 [exp] 49 / 2e-05 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037454 [exp] 48 / 2e-05 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 556 / 0 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 537 / 0 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.005G138500 [exp] 252 / 4e-78 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.007G044350 [exp] 84 / 7e-19 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.001G163000 [exp] 52 / 1e-06 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.008G144300 [exp] 48 / 1e-05 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.010G098000 [exp] 44 / 0.0003 AT2G02170 434 / 2e-148 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10009750 pacid=23178314 polypeptide=Lus10009750 locus=Lus10009750.g ID=Lus10009750.BGIv1.0 annot-version=v1.0 ATGCCGGAACTCGCAACGCGCCTTCACCAAGATCATCTCGGAGCTCGAGACTTCAGTCCCGATTCCGTGATTTTCACGCCTGAGTCCAACTTCAGCCATT TCTCCTCCGCCTCCGCTAGCGCCGACCGCTCCTCCTTCGCTTCTGACGCTCACGATAACGACTCCCTTGCTTACGAATTCTCATCGCGTTTGGCAGTGAG CGCCGGTGGAGGAGGTGAACTTGTGTTTCATCACCAGGACAGTCGGAGCGGTGGTCCAGATCCAAATCCAAAGAAAGCGACTGAACCAGCCCGGCTTTCG TCCAGAAACAGAAAGAGAGATAATGCGAAAGCTTGTAAGGACGGTAGCAACAGAGCTAATGCACTTCACGAAAGCGACAATCAGCTGCTTGATTCAGCTA GAAGCTCCTTCTCTCTTGCTCTCAAAGAGTGTCAAGATCGGAGATCAAGATCTGACGCCGTCGCGAAGAATGCGGAGAGGAGAAGGCCTGCATCGTTTGA TTTAAACAATGTCTTGCCAGCGTCCTCCTCCCCACGGTTGAAGGCCGTGCTAAACAGCTCAATCTCCTTGTCTCGTAAGCCGGCGGCGTTTCCTAGCCCT GGCACACCCAACTATCGCCACGATAGTGTTGGATTGATCCAGACGGATTGGAGCTCGGAGAGAGTGCCACTGCATGCAAGCGCCGCCAGACGCCAGCTCA GCAGCGGTGGTTTGTTCCCTTACAATAACGGGAGGGCCATGCCGTCGAAATGGGAGGATGCTGAGCGCTGGATTGTTAGCCCTGTTTCTGGAGATGGTTT AGTGAAGACGTCTCTTCCACAGCCGCACAGAAGACCCAAGGCTAAGAGTGGGCCGCTGGGGCCTCCTGGGGTTGCTTATCACTCTCAATATTCTCCGGTT ATACCAGTAATTGAAGGCGGGAATCTAAGGAACTTCACGGTTGGTTCTCCTTTCTCGGCTGCTGTTTTTGCTGCTGATGGATTGGGTGGTCTTGCGAATT GCCACGGAGTTGGCTTTCCTGTTCGTACAGATCCTTGCATGGCCCGTTCTGTTAGTGTCCATGGATGTTCCGAGGTGGTAGCTCAAGCGTCCTCCTTGCT TTGTCAAGAGGATAAAGTTGAGTGTGTCAAAGATGCTGCCACTGATATATCCCGTGTTGTTTCAAGAAGAGACATGGCGACTCAAATGAGTCCTGCAAGC AGTAACCATTCGTCTCCTAGCAAAAGGCTGTCGCTCATGGCTTCCACTACCTCTGTCCTGCCCATCGTGGAAGCACAAAACTTTCAGTCCCCTAAATCAG AAGTTAGGGATGTGCAGGTAGATGAAACGGTTACTGTTACAAGATGGTCCAGAAAGCATAGGGGCAGCAATCATAGCAAAGGTTCTGAAATATTTGATTG GAGAAAAAAAGTTGTCGGCTGTCGATCTTCAGAATGGGAAGTTTCAGAAACCTCCACTAGTTTTTCGAAATTACAAAGAGAGGAAGCTAAAATATCAGCA TGGGAAAACCTGCAGAATGCAAAGGCTGAAGCAGCGATAAGAAAGCTCGAGATGAAGCTTGAAAAGAAGAGGTCGTCCTCAATGAAGAGAATCATGAAAA AGTTGAGATCAGCGCAGAAGAGAGCCCAAGAGATGAGAAGTTCAGTTGTGGACAATGAGGGGCGTCAAGTTTCAAGGAGATCCGAGAAGAACGTATCGTT CCAGGAAAACCGTCAGAAGGGTGTGCTTAGCGGCTGCTTTACATGCCCTGCTTTCTAA
AA sequence Show only first row Show all	>Lus10009750 pacid=23178314 polypeptide=Lus10009750 locus=Lus10009750.g ID=Lus10009750.BGIv1.0 annot-version=v1.0 MPELATRLHQDHLGARDFSPDSVIFTPESNFSHFSSASASADRSSFASDAHDNDSLAYEFSSRLAVSAGGGGELVFHHQDSRSGGPDPNPKKATEPARLS SRNRKRDNAKACKDGSNRANALHESDNQLLDSARSSFSLALKECQDRRSRSDAVAKNAERRRPASFDLNNVLPASSSPRLKAVLNSSISLSRKPAAFPSP GTPNYRHDSVGLIQTDWSSERVPLHASAARRQLSSGGLFPYNNGRAMPSKWEDAERWIVSPVSGDGLVKTSLPQPHRRPKAKSGPLGPPGVAYHSQYSPV IPVIEGGNLRNFTVGSPFSAAVFAADGLGGLANCHGVGFPVRTDPCMARSVSVHGCSEVVAQASSLLCQEDKVECVKDAATDISRVVSRRDMATQMSPAS SNHSSPSKRLSLMASTTSVLPIVEAQNFQSPKSEVRDVQVDETVTVTRWSRKHRGSNHSKGSEIFDWRKKVVGCRSSEWEVSETSTSFSKLQREEAKISA WENLQNAKAEAAIRKLEMKLEKKRSSSMKRIMKKLRSAQKRAQEMRSSVVDNEGRQVSRRSEKNVSFQENRQKGVLSGCFTCPAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	0	1
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	2.0	0.8918
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	2.2	0.8784
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	2.2	0.9044
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	2.4	0.8857
AT5G13260			unknown protein		Lus10001801 [exp]	5.3	0.8685
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	6.0	0.8647
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	8.9	0.8806
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	9.5	0.8568
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	9.5	0.8691
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	9.8	0.8659

Compare expression of checked genes

Lus10009750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.