Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45231 363 / 3e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.2) AT1G30550 253 / 2e-79 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028000 [exp] 551 / 0 AT1G45231 359 / 1e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF09445 [flax] [poplar] Methyltransf_15 RNA cap guanine-N2 methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009752 pacid=23178335 polypeptide=Lus10009752 locus=Lus10009752.g ID=Lus10009752.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGCGAAGTAGGAACGCAAGCTTTCCCTTCTATTAGAGCTCTCGGCTCCCTTTTCAATCTTACTGAAGTCTACATATGGTATTATGCTGCCC CCGGGCTCCCTTTGGCTTCTGTTCCCGTTAAAACGCAAGCTGTAGTTGTTGTTGCAAGTTCAATGAAATTGCGTCCGTTTGTCTTCTTTGCAGGGACGAC GGTTCGACGGAGACTCGAGAAGTGTCCTTATTTCCAGATTCCGTTCTGTGGTCTTGTGTTTCAGTTCCGGCAGCACTTTTTCATCCGTATCTTGTATTCA GTTTTCTCTTATTTGTCTGAGATACAGGAGTTGGAGCTGGAGAAGGACGATACTAGCGCCGAAGTTCCTGCTTCGGCTACTGTGTTTGATCCGGAAGATG AAGAATTGAGCAAACAGATGGATGCTTTAGGGCTTCCCCTTGTATTCCAATCGAATAAACAGACTAGGAGTAAGACCAATAAAAGCAAAAGAAAAGGGAC AGTTAGAGAGCATTCTCGCATACATAAAGCTGGGGCTAATGGATCAGTAGAATTTTCCAAAGTGAGTGAAGTAGGGACTGTTTCTCCTATTGTATTGCAT GATAACACAAGCAACTCGTTAAGTTGCATATCAATGCTGGGCGAGAGTGAATCATGTTATTGTGATGTTGCAGTGGATAAAATCAACTATAAAGATCTCA CAGTTGAAGATTGTCAGAGTCCAGCTGATAATAAGCATGAGAAAATTCTTGATGATCAGTATAGTAAATGTAAGAGGGATCAGACTGTACCTGAAACTGA TCTTATGGCTAATAAAAATGATAAGGAACGTGTAATTCTGGGTTGTTCAGATGCTGTAGTTTCCCCAGTATCCTGTGTGCCTGGTGGTCTGAACGAAGGC GGGGATTTAATGGAGAAGGACTGCCTATATGACTACCCTGTTTCTCATGATCTTCAAGAACATGTGAATTCCATTGAGCAGCCTGAAGTTTCAGAGGCCA TAATGCTTCAGGGTTCAGAAGCTCATGGGCACAATGGGATAGGTTGTCATGACAAAAATGATGCTTTTGGGGATTGGGCAGTATACTGGGATTCGTTCTA CATGAGGAGTTACTTTTATAATGCAAAAACAAATAGTTCTACATGGTCTGCACCCCCTGGAATGGAACATCTTGTATTTAGTAGTCTTACTAATGAATCA GATGAAGTGATTGACAAAGAAACTGGGATGGATCAAGACCTTTCTGTTTCCTGTGGCTTGATTGATCATTATGGATCATTTGAGGAGTCCAGTAATGATC ATAGAATGGAAGATCAGCAATCTACTGAAGTACCTGGTGGAGTTGGAACTGCCCCAGATAGCTCTATGCCAAGCATGACTTTATCGACAATAAATGGCTG CCTGGAGTATGTGGATGAACACAAAGGGGTAGATAAAGGCTGTGCTGCTGAAGTTTCTTGGCAAAAACCACCAGAGGCACATAGCCATACTGACAGAAGT CTTAAAAGTATCGGTTTGCTTTGGACAGATCTCCAATCTGAAGTTGTTTCTGAGGAGCGTTTTGCCTCTATTGAAAAATATTGGTGTCAGCGGTACTCTC TATTCTCTAGATTTGATGAGGGCATAAGAATGGATGAGGAAGGGTGGTTCTCTGTAACTCCAGAACTCATAGCGTGGCATCATGCTTTGCAATGTGTGGA TGACATTGTTATTGACTGCTTCACTGGGGTTGGTGGAAATGCTATCCAATTTGCGCGAAGGTGCAAACATGTTATTGCAATTGATATAGATCTGAAGAAG ATCGAGTATGCAGATCATAATGCTGCCATTTATGAAGTTGATGACCAAATAGATTTCATAGTGGGGGACTTCTTCAGTTTAGCACCGAAATTGAAGGGGT TGGCAGACACAGTGTTTTTGTCACCACCGTGGGGTGGGCCTGATTATCTTAAAGAGAAGACTTATGACATGAAGATGCTGAAACCGCTTGACGGATATTC TCTGTTCAACGCTGCAAAGCAAATTGCTCCAAGGATTATCATGTTTCTCCCTAGAAACGTGGAGCTTGATCAGTTGGCAAAGTTGGCTCTATCTGCTAAT CCTCCATGGTCCCTAGAGGTTGAGAAGAACTTCTTGAACGGGAAGTTGAAAGCAATAACAGCTTACTTGTGCGACACAACAGCATTTGAGAATAGCGGAT CGACATAA
AA sequence Show only first row Show all	>Lus10009752 pacid=23178335 polypeptide=Lus10009752 locus=Lus10009752.g ID=Lus10009752.BGIv1.0 annot-version=v1.0 MEESEVGTQAFPSIRALGSLFNLTEVYIWYYAAPGLPLASVPVKTQAVVVVASSMKLRPFVFFAGTTVRRRLEKCPYFQIPFCGLVFQFRQHFFIRILYS VFSYLSEIQELELEKDDTSAEVPASATVFDPEDEELSKQMDALGLPLVFQSNKQTRSKTNKSKRKGTVREHSRIHKAGANGSVEFSKVSEVGTVSPIVLH DNTSNSLSCISMLGESESCYCDVAVDKINYKDLTVEDCQSPADNKHEKILDDQYSKCKRDQTVPETDLMANKNDKERVILGCSDAVVSPVSCVPGGLNEG GDLMEKDCLYDYPVSHDLQEHVNSIEQPEVSEAIMLQGSEAHGHNGIGCHDKNDAFGDWAVYWDSFYMRSYFYNAKTNSSTWSAPPGMEHLVFSSLTNES DEVIDKETGMDQDLSVSCGLIDHYGSFEESSNDHRMEDQQSTEVPGGVGTAPDSSMPSMTLSTINGCLEYVDEHKGVDKGCAAEVSWQKPPEAHSHTDRS LKSIGLLWTDLQSEVVSEERFASIEKYWCQRYSLFSRFDEGIRMDEEGWFSVTPELIAWHHALQCVDDIVIDCFTGVGGNAIQFARRCKHVIAIDIDLKK IEYADHNAAIYEVDDQIDFIVGDFFSLAPKLKGLADTVFLSPPWGGPDYLKEKTYDMKMLKPLDGYSLFNAAKQIAPRIIMFLPRNVELDQLAKLALSAN PPWSLEVEKNFLNGKLKAITAYLCDTTAFENSGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	3.3	0.9084
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	3.5	0.8980
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	3.5	0.8953
AT5G51340			Tetratricopeptide repeat (TPR)...		Lus10019124 [exp]	3.6	0.8819
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	4.2	0.8971
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	5.3	0.8818
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	6.0	0.8887
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	6.7	0.8814
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	7.0	0.8880
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	7.7	0.8624

Compare expression of checked genes

Lus10009752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.