Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42920 799 / 0 AtTHO5 THO complex, subunit 5 (.1.2) AT1G45233 493 / 4e-168 AtTHO5 THO complex, subunit 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006490 [exp] 1351 / 0 AT5G42920 868 / 0.0 THO complex, subunit 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028100 [exp] 951 / 0 AT5G42920 827 / 0.0 THO complex, subunit 5 (.1.2) Potri.002G125300 [exp] 314 / 3e-99 AT5G42920 318 / 6e-102 THO complex, subunit 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09766 [flax] [poplar] FmiP_Thoc5 Fms-interacting protein/Thoc5
Representative CDS sequence Show only first row Show all	>Lus10009754 pacid=23178330 polypeptide=Lus10009754 locus=Lus10009754.g ID=Lus10009754.BGIv1.0 annot-version=v1.0 ATGGAGGACGGGGAGATAGTGGAAGCCGTCGCGATGGATGAGGACCTGCAGCTTCTCAAGAACGGCAAGTCGGCATACGACCTTCTCCGAGATAGCAAAG CTTCGGTGGAGGAAATCGTTTCCCAGATCGTCTCCATGAAAAAGGACGGCAAGGACAAATCGCAGCTCCGGGAGCTCGTTACTCAAACGTTTCTTCATTT CGTCACTCTCCGACAGGTCAATCGGTCGATTTTGCTGCACGAAGATCGAGTGAAGGCGGAGACGGAGCGTGCCAAGACGCCTGTGGATTTCACGACTTTG CAGCTGCATAACTTGATGTATGAGAAGAGCCATTACGTCAAAGCTATAAAGGCCTGTAAAGACTTCAAGTCGAAGTATCCTGACATCCAGCTCGTTCCTG AAGAGGAGTTCTTTCGAGATGCGCCAGATGATATCAAGAGTTCCGTCTTGTCGAGCGATGGCTCTCAGAATTTGATGCTCAAAAGACTCAACTTTGAGCT CCACCAGCGAAAGGAGCTTTGCAAGCTTCGTGAGAAACTGGAATCACAGAAGAAAAGCCTTCTGGAGACGATTGCAACTAGGAAGAAGTTCTTGTCAAGT CTTCCATCACACCTTAAGTCACTCAAGAAAGCATCGTTGCCTGTACAGAACCAATTGGGGATAATGCATACTAAGAAACTAAAACAGTATAGCTCAGCAG AGCTACTTCCTCCTCCTCTCTATGTGATCTTCTCTCAGTTAGTGGCCCAGAAGGAGGCGTTTGGTGAAGAGATTGACCTTGAGATTATTGGGAGTTTAAA AGATGCTCAAAATTTTGCTCGCCAGCAAGCAAGTAAAGACACCAGAGCATCTGCTAATGTAGAGACTCTGAGGGTTGATGATGATGTACCTGAGGACGAA GATGATGTGCAAAGAAGGAGAAAGCGACCTAAAAGGGCTCCGAGTAAGGAGAATCCTGATCAGGCAGGGTTACATCAAGTTCACCCACTTAAGCTCATCC TCCACATATACGATGATGAGGCTTCTGATCCAAAATCCACGAAACTCTTTACTTTGAAGTTTGAATACCTGTTAAAGCTACACGTAGTCTGTGTTGGTGT AGAAGGTTCACACGAGGGAGCTGACAGTAACATCTTGTGCAACTTATTCCCTAATGACACTGGGGCTGAACTTCCTCACCAGTCTGCCAAGCTCACAGCT GGAAATTCACTTGCCTTTGATGAGAAGAAAACTTCTCGTCCATATAAGTGGGCTCAACATTTGGCCGGAATTGATTTCTTACCAGAGATGGCACCATTGC TGAGTAGTCATGAAAATTCAAGTAGTGAAACATCTAAAACTGATGCTGTATCTGGACTGTCATTATATCGACAACAGAATCGGGTGCAGACAGTGGTCGA AAGAATTCGCTCTCGGAAAAGGGCTCAGCTGGCTCTTGTGGAGCAGCTTGATTCACTTATGCAGCTTAAGTGGCCTTCTATGAATTGTGAAAGCGTTCCA TGGGCTTTGCATACTCCTTTGTGCAGTTTGGATAGTTGGTCATCTCTAGGGCCGCTACCTAATCAGGTTTCTTCGTTGCATGCCATTCCTACAGATGAAG TCGAGGAACACATGGATGTGGATAATGGACAAGCTGGTACTTCAAAGGAAGTGTTAGAGGGCATGCGGGAAGATGGGGAGCTCCCATCATTGGTTCAGAG GGGTTCCATGGCAGATGATTCAATGGTGTCCAATGTAGAGCGGTCTAGGCAGCTTGCTTTGATTTCAAAGAGCATTATATCTCCACTGAACAAGGTTAAG TCACAAAGCTTTAAGAAATATGATGAAGATTTAGAACTACTATTAGATATTGATAGTGATCATGATGAGCTTGTCCCAACTGAGCAAGAGGCAGATGGTA TGGATTCTATTCAAAGCCATTCGATTTCCTCAGAGTCCTGGGTTGATTTTGGTTCTAAAGAGTATTCCCTTGTCTTGGCAAGAAAACTGAGCTCCGAAGG GAGGAGTGTGAAGTTGGAAGCAAAGATTAAGATTAGCATGGAGTATCCTCTAAGGCCACCTTTGTTTTCATTGGGCATATGTCGTTCTGAAGGAAGCCAG AATGAAGTTGATGATTCTAAATGGTACAATGAACTTCGTGCCATTGAAGCAGAGGTAAACCTCAATATACTGGAGATAGTGCCAAATGATGAAGAAAACC ACATGATAGGGCACCAAATTCTATGTCTTGCCATGTTGTTTGACCATCTTATGGACGAGGAAGCGTCACGTAGCGAGAAGAGTAGCCACGTTGTTGATGC CAGTTTGTCAAAGCCGGTTATCGGTACAATTATGGGTAGGCTACATAGAGGCAGGGACCGGAGGAGGATGATATCTTGGAAGGGCGTCTAG
AA sequence Show only first row Show all	>Lus10009754 pacid=23178330 polypeptide=Lus10009754 locus=Lus10009754.g ID=Lus10009754.BGIv1.0 annot-version=v1.0 MEDGEIVEAVAMDEDLQLLKNGKSAYDLLRDSKASVEEIVSQIVSMKKDGKDKSQLRELVTQTFLHFVTLRQVNRSILLHEDRVKAETERAKTPVDFTTL QLHNLMYEKSHYVKAIKACKDFKSKYPDIQLVPEEEFFRDAPDDIKSSVLSSDGSQNLMLKRLNFELHQRKELCKLREKLESQKKSLLETIATRKKFLSS LPSHLKSLKKASLPVQNQLGIMHTKKLKQYSSAELLPPPLYVIFSQLVAQKEAFGEEIDLEIIGSLKDAQNFARQQASKDTRASANVETLRVDDDVPEDE DDVQRRRKRPKRAPSKENPDQAGLHQVHPLKLILHIYDDEASDPKSTKLFTLKFEYLLKLHVVCVGVEGSHEGADSNILCNLFPNDTGAELPHQSAKLTA GNSLAFDEKKTSRPYKWAQHLAGIDFLPEMAPLLSSHENSSSETSKTDAVSGLSLYRQQNRVQTVVERIRSRKRAQLALVEQLDSLMQLKWPSMNCESVP WALHTPLCSLDSWSSLGPLPNQVSSLHAIPTDEVEEHMDVDNGQAGTSKEVLEGMREDGELPSLVQRGSMADDSMVSNVERSRQLALISKSIISPLNKVK SQSFKKYDEDLELLLDIDSDHDELVPTEQEADGMDSIQSHSISSESWVDFGSKEYSLVLARKLSSEGRSVKLEAKIKISMEYPLRPPLFSLGICRSEGSQ NEVDDSKWYNELRAIEAEVNLNILEIVPNDEENHMIGHQILCLAMLFDHLMDEEASRSEKSSHVVDASLSKPVIGTIMGRLHRGRDRRRMISWKGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	0	1
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	1.0	0.9052
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	2.0	0.8815
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	3.5	0.8744
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	4.2	0.8658
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	4.5	0.8721
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	4.9	0.8552
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	5.4	0.8175
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	5.7	0.8154
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	5.9	0.8698
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10013745 [exp]	6.0	0.8316

Compare expression of checked genes

Lus10009754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.