Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49720 206 / 1e-61 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 147 / 2e-39 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 145 / 8e-39 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G45249 144 / 3e-38 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G56850 107 / 8e-26 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT3G44460 101 / 1e-23 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 98 / 3e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 95 / 8e-22 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G36270 76 / 1e-14 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G44080 61 / 6e-10 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006489 [exp] 503 / 1e-177 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 157 / 5e-43 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 152 / 3e-41 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 114 / 7e-28 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10008928 [exp] 104 / 5e-26 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 107 / 2e-25 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 104 / 1e-24 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 103 / 5e-24 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008929 [exp] 99 / 6e-23 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125400 [exp] 180 / 3e-51 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.014G028200 [exp] 174 / 9e-50 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.004G140600 [exp] 166 / 2e-46 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.009G101200 [exp] 157 / 6e-43 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.006G083000 [exp] 109 / 5e-26 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248100 [exp] 106 / 2e-25 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 105 / 3e-25 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 104 / 9e-25 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 96 / 4e-22 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 96 / 4e-22 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10009755 pacid=23178333 polypeptide=Lus10009755 locus=Lus10009755.g ID=Lus10009755.BGIv1.0 annot-version=v1.0 ATGGGTACCAACTGGAATTTCAAGAACATCACCAACGATTCAGCGCAGCCGCCGGGGAACAACCTGGCATTAACTAGGCAATTGTCGTCAATATATTCGT TGACGTTTGATGAGTTCCAGAGCAGTGTAGGTGGGATAGGGAAGGACTTTGGGTCGATGAACATGGATGAGCTGCTGAAGAACATATGGAGTGCTGAGGA GAATCAGAATCAGAATCACAACATGGCAGCAGCAGCAGCAGCAGCAGCAACAGAGGACGGCGGTGTTCTGCAACGACAGGGGTCATTAACGTTGCCTAGA ACTCTGAGCCAGAAGACAGTGGATGAAGTTTGGAAGGACGTATGGAAGGATTCTGGGAGTGGGAGTAGTGGAGTAGGAGTAGGAGATATTGGATCAGGAA GGAATCCCCAAAGGCAGCAGACATTGGGGGAAATTACATTGGAGGAGTTTTTGGTGAGAGCTGGAGTTGTTAGGGAAGAGATTACTACACCTGTAGTAGC AGCTGGAAAAGTTCAGCAGCCAAATGGAGTAGTAGGGGTTTCTCCTTTTCGGAATAACAATACTACTGTTGGGTATGGAATTGGGTTTCAGCAAAGCAAC GAAGCAAGTCATGCAGTGGGTTTGAGTAGCGGTAGTAATAATCCCAACTATGGTTCAAATTCGAGTTTGAATGTGAATGGTATTATTAGATCCAATCAAG TGCCAAGTGCAGCCACAGTTACAGGTGTGCAGCCACAGTTACAGGTGCATCAGCATCAGCCTCCTCAAATATTTCCAAAGCTGCAGGGTAATGTGGGATA TGGTGGAATGATGGGGATTGGGGATCAAGGGTTGAATATTCAAGGAATGGCTGGATTAGGAGGAGGGTCATCGCCAGCTAGCCAGGTATCATCAGATGGG ATAGGGAAGAGCAATGGGGAGACATCATCAGTGTCTCCTATTGTACCATATCCGTATATTGGGGGTGTGAGGGGTAGAAGAGCTAATACAGCTGTGGAGA AGGTGGTGGAAAGGAGGCAGAGGAGAATGATCAAGAATAGAGAATCTGCTGCTAGGTCTAGAGCTCGTAAGCAGGCATATACTACGGAATTAGAAGCAGA AGTTGCAAAGTTAAAAGAGGAGAATCAACAGTTGAAGAGGAAACAAGTAATTTTCATTCATTCATTCATGCTTGCTGTTATTTGTATAGACTATTGGGGT GGGGTGGGAATCAATAATGTTGAACGCCTGGGTTTGGTTGGTGCAGGAAGAAATGACGGAGATGCAGAAAAATCAGGTTTCTCTCTTTGGAATGGAAACT ACTGCTCCTTCCTTCCCCGAACCTTTATGAATATTGATATCACAACTTATGGCCTTAGCCTTAGTGTTGTATCATGA
AA sequence Show only first row Show all	>Lus10009755 pacid=23178333 polypeptide=Lus10009755 locus=Lus10009755.g ID=Lus10009755.BGIv1.0 annot-version=v1.0 MGTNWNFKNITNDSAQPPGNNLALTRQLSSIYSLTFDEFQSSVGGIGKDFGSMNMDELLKNIWSAEENQNQNHNMAAAAAAAATEDGGVLQRQGSLTLPR TLSQKTVDEVWKDVWKDSGSGSSGVGVGDIGSGRNPQRQQTLGEITLEEFLVRAGVVREEITTPVVAAGKVQQPNGVVGVSPFRNNNTTVGYGIGFQQSN EASHAVGLSSGSNNPNYGSNSSLNVNGIIRSNQVPSAATVTGVQPQLQVHQHQPPQIFPKLQGNVGYGGMMGIGDQGLNIQGMAGLGGGSSPASQVSSDG IGKSNGETSSVSPIVPYPYIGGVRGRRANTAVEKVVERRQRRMIKNRESAARSRARKQAYTTELEAEVAKLKEENQQLKRKQVIFIHSFMLAVICIDYWG GVGINNVERLGLVGAGRNDGDAEKSGFSLWNGNYCSFLPRTFMNIDITTYGLSLSVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10009755 [exp]	0	1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Lus10006489 [exp]	1.0	0.9186
AT4G26470			Calcium-binding EF-hand family...		Lus10027114 [exp]	10.2	0.8163
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031729 [exp]	12.5	0.7491
AT1G07040			unknown protein		Lus10013272 [exp]	13.0	0.8529
AT1G27300			unknown protein		Lus10037034 [exp]	13.7	0.8479
AT3G14280			unknown protein		Lus10003937 [exp]	14.3	0.8451
AT1G65020			unknown protein		Lus10024543 [exp]	22.8	0.8339
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	27.5	0.8189
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	29.1	0.8476
AT1G07040			unknown protein		Lus10030795 [exp]	30.8	0.8242

Compare expression of checked genes

Lus10009755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.