Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45230 178 / 4e-56 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT3G46630 125 / 2e-35 Protein of unknown function (DUF3223) (.1) AT2G40030 94 / 5e-22 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 47 / 6e-06 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G62440 45 / 1e-05 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006488 [exp] 377 / 1e-134 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10018738 [exp] 117 / 2e-32 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10024797 [exp] 114 / 2e-31 AT3G46630 201 / 9e-66 Protein of unknown function (DUF3223) (.1) Lus10016332 [exp] 99 / 1e-23 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002748 [exp] 98 / 4e-23 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10006339 [exp] 54 / 4e-08 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 52 / 1e-07 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10011903 [exp] 49 / 8e-07 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 46 / 1e-05 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028300 [exp] 214 / 2e-70 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.002G125700 [exp] 213 / 1e-69 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023400 [exp] 123 / 5e-35 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 109 / 2e-29 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.003G196900 [exp] 94 / 8e-22 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 91 / 1e-20 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 50 / 4e-07 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.005G033100 [exp] 44 / 2e-05 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 43 / 3e-05 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10009756 pacid=23178323 polypeptide=Lus10009756 locus=Lus10009756.g ID=Lus10009756.BGIv1.0 annot-version=v1.0 ATGACCATGGCTTCGCTATCCAAACCACTCCCGTGCCTCTACCGCCACTCGAATCCTGTCCAGGCCTTTCCGTATCCGGTAATTCTACAGTTTTCGTTCC ACCGGACTGCATGGTCGACTCCGAGGGTTTGTTGTGCTCTGAAGACGGAATCAGAAGAGTCGAATTTGGTGAGGAAGCCAGTTAACACCACTGGCAAGAG GAAGAAATTGGGATCGGAGCAAGAGGATGTCGTTGAAGGACAGAAGTACAACTCAAGTAGAGAAGAAGAAAAATATGAAGATGAAGATGAAGGAGGAGAA GCGGAAGAGGAAGAATTTGTGGACTGGGAGGAAAAGATTTTGGAGGACACGGTTCCGCTTGTTGGATTCGTGAGAATGATTCTGCATTCTGGAAAATATG AAGTTGGAGAGAGATTAAGTGTGGATCACGAGAGGATTATCACTGATAGGTTGCTTCCATATCATCCTGAATTTGAAGCAAAGATAGGGTGTGGGCTTGA TTACATCATGTTAGGATATCATCCCATCCACTCAAATTCAAAGTGTATGTTCATAGTCAGAAAGGATGGAGAATCAATAGACTTCTCTTACTGGAAATGC ATAAAGGGGTTGATTAGGAAAAAGTATCCGTTATATGCAGACACTTTCATTCGCGGGCACTTTGGCAAACAGAGCCGGAAATGA
AA sequence Show only first row Show all	>Lus10009756 pacid=23178323 polypeptide=Lus10009756 locus=Lus10009756.g ID=Lus10009756.BGIv1.0 annot-version=v1.0 MTMASLSKPLPCLYRHSNPVQAFPYPVILQFSFHRTAWSTPRVCCALKTESEESNLVRKPVNTTGKRKKLGSEQEDVVEGQKYNSSREEEKYEDEDEGGE AEEEEFVDWEEKILEDTVPLVGFVRMILHSGKYEVGERLSVDHERIITDRLLPYHPEFEAKIGCGLDYIMLGYHPIHSNSKCMFIVRKDGESIDFSYWKC IKGLIRKKYPLYADTFIRGHFGKQSRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	0	1
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	1.4	0.9516
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	3.5	0.9481
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	3.5	0.9384
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	4.5	0.9374
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	4.6	0.9334
AT4G13220			unknown protein		Lus10022819 [exp]	8.2	0.9226
AT4G16580			Protein phosphatase 2C family ...		Lus10014413 [exp]	9.5	0.8904
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	10.0	0.9365
AT4G13220			unknown protein		Lus10011887 [exp]	11.8	0.9143
AT4G34090			unknown protein		Lus10041575 [exp]	12.2	0.9154

Compare expression of checked genes

Lus10009756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.