Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17650 281 / 6e-96 Polyketide cyclase / dehydrase and lipid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021724 [exp] 307 / 5e-106 AT4G17650 230 / 1e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1) Lus10042651 [exp] 305 / 1e-105 AT4G17650 228 / 4e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126000 [exp] 320 / 2e-111 AT4G17650 288 / 2e-98 Polyketide cyclase / dehydrase and lipid transport protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10009758 pacid=23178318 polypeptide=Lus10009758 locus=Lus10009758.g ID=Lus10009758.BGIv1.0 annot-version=v1.0 ATGCCGCCCTTCAGCTCTACATCCAAGGTACTCCGGTCTTTAATATCCAGGTCGGGTCGCTCCAGACATTTCGTTGCCTCTTCTAGACACCACCGGATTC AATGTTCCAGAAGCATTGTTCAAGTTCCTACGCCGTCGAGTTACGCGGGGAAGGATTTTAGTTCAACATTGTTGGGGAGTTCGTGCAGCGGGAGCTCTGT GGTTCAACGTAGGCGCTTCCTCGGCTGCGGAGACGGGGAAGATCAAGGTGGTGTTTTGTCCAAGGTTTACGAAGAGAGACGCGTCTTGGGGTATTCTCCG GAGCAATTGTTTGATGTGGTTGCGGCAGTGGATTTTTATAATGGTTTCGTGCCTTGGTGCCAGCGGTCTGACATAGTCAAACGTTACCCAGATGGATCAT TTGACGCTGAGCTTGAGATCGGCTTCAAGTTTCTGGTTGAGAGCTACATTTCTCATGTTGAATTAAACAGACCTAAGATGGTGAAGACCAGTGCATCCCA GAGTGGTCTTTTCGACCACTTGATAAACATATGGGAATTTAATCCAGGACCAGTTCCAGGCAGTTGTGACCTTTACTTCCTGGTAGATTTTAAGTTTCAG TCACCACTTTACAGAAAGGTGGCATCCTTGTTTTTCAAGGAGGTGGTATCTCGTTTAGTTGGTTCCTTCAGTGAACGCTGCCGTGTGATATATGGACCAG GAGTAGAGGTCCTAGAGAACTCTTACGAAAACAAGGCGTGA
AA sequence Show only first row Show all	>Lus10009758 pacid=23178318 polypeptide=Lus10009758 locus=Lus10009758.g ID=Lus10009758.BGIv1.0 annot-version=v1.0 MPPFSSTSKVLRSLISRSGRSRHFVASSRHHRIQCSRSIVQVPTPSSYAGKDFSSTLLGSSCSGSSVVQRRRFLGCGDGEDQGGVLSKVYEERRVLGYSP EQLFDVVAAVDFYNGFVPWCQRSDIVKRYPDGSFDAELEIGFKFLVESYISHVELNRPKMVKTSASQSGLFDHLINIWEFNPGPVPGSCDLYFLVDFKFQ SPLYRKVASLFFKEVVSRLVGSFSERCRVIYGPGVEVLENSYENKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17650			Polyketide cyclase / dehydrase...		Lus10009758 [exp]	0	1
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10015223 [exp]	11.4	0.8541
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	28.7	0.8601
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	68.4	0.8524
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	69.2	0.8495
AT2G34250			SecY protein transport family ...		Lus10010932 [exp]	79.8	0.8449
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	122.7	0.8342
AT1G12120			Plant protein of unknown funct...		Lus10024611 [exp]	127.9	0.8378
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	153.2	0.8320
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	201.8	0.8210
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10029985 [exp]	218.7	0.8163

Compare expression of checked genes

Lus10009758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.