Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33350 339 / 1e-117 AtTic22-IV translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) AT3G23710 137 / 4e-38 AtTic22-III translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006487 [exp] 480 / 3e-173 AT4G33350 358 / 2e-125 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10022378 [exp] 146 / 9e-42 AT3G23710 305 / 2e-103 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Lus10007784 [exp] 127 / 5e-35 AT3G23710 257 / 2e-85 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126800 [exp] 369 / 1e-129 AT4G33350 374 / 7e-132 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.014G030000 [exp] 367 / 1e-128 AT4G33350 359 / 5e-126 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G236000 [exp] 152 / 4e-44 AT3G23710 351 / 7e-122 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10009759 pacid=23178320 polypeptide=Lus10009759 locus=Lus10009759.g ID=Lus10009759.BGIv1.0 annot-version=v1.0 ATGGAGCCCTTTAAACCCTCAAACCCTCTCTTATCTTTCTCCTCCTTCCTCCACCAACAATGCCTCCGCATAGGCTCCGATTTCTCCACTCGCCTCGGCG ACACCACTCGAGCCCTATCCACCTCCTTCCCCTCAGCAAGTGCCAGGAGGCTCCACCTTCCACCGCCGCCGCTATTCGCCTCCGTTTCTCAGGCGAAACC GTCATCCCCAAGGCTTAGCTCCGATTACGTGGCTAAGAGACTCACTGGCACGACCGTCTACACGGTGAGCAACACCAACAACGAGTTCGTCCTCATTTCT GATCCTGATGGAGCTAAGTCCATCGGATTGCTCTGCTTCCGCAAGGAAGATGCTGAAGCTTTTCTGTCTCAGGTGCGATTACGGAGAAATGAATTACGAA GTTCGGCCAAGGTAGTGCCTATTACACTTGAGCAGGTCTACATGCTGAAGGTTGAAGGCATTGCATTCAGGTTCTTGCCAGATCCTGTCCAAATAAAGAA CGCATTGGAGATGAAAACTTCCAGCACAAGAAGTGGGTTCGATGGAGTTCCTGTATTCCAGTCAGAACTTCTGGCGGTGAAGAAGAAAAACAGGCGTTTC TGCCCTATATACTTCCAAAAGGAGGACATAGATAAAGAATTGGCCAAGGTTTCAAGAGGGAGAGCCATTTCTCCTAATATAATGGGATCAAAGAAATTTG TAGCAGCTGTTTTGAGAGATGTCAAGGGAGAGAATAAGCTGAGTATTGAAAGTAGAGATGTGGGGAGCTTGGAAGATGTGCTGAGAAAAATTGAGACGAG TGAGAAAAACTCGGGTTGGGAAGATTTGATATTCATTCCACCTGGTAAAACTCAGTCCGAACACATTAATGACATAACCAAGTGA
AA sequence Show only first row Show all	>Lus10009759 pacid=23178320 polypeptide=Lus10009759 locus=Lus10009759.g ID=Lus10009759.BGIv1.0 annot-version=v1.0 MEPFKPSNPLLSFSSFLHQQCLRIGSDFSTRLGDTTRALSTSFPSASARRLHLPPPPLFASVSQAKPSSPRLSSDYVAKRLTGTTVYTVSNTNNEFVLIS DPDGAKSIGLLCFRKEDAEAFLSQVRLRRNELRSSAKVVPITLEQVYMLKVEGIAFRFLPDPVQIKNALEMKTSSTRSGFDGVPVFQSELLAVKKKNRRF CPIYFQKEDIDKELAKVSRGRAISPNIMGSKKFVAAVLRDVKGENKLSIESRDVGSLEDVLRKIETSEKNSGWEDLIFIPPGKTQSEHINDITK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	0	1
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	2.0	0.7937
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	8.2	0.7974
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	19.1	0.7717
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	21.3	0.7787
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	23.3	0.7660
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	25.2	0.7761
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	31.7	0.7739
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	32.9	0.7439
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	36.0	0.7541
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	36.5	0.7590

Compare expression of checked genes

Lus10009759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.