Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 123 / 1e-33 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042345 [exp] 175 / 2e-53 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10026322 [exp] 172 / 3e-52 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10040509 [exp] 155 / 8e-46 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10011310 [exp] 155 / 1e-45 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 150 / 6e-44 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.009G111569 [exp] 150 / 6e-44 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.004G150400 [exp] 138 / 3e-39 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009762 pacid=23178332 polypeptide=Lus10009762 locus=Lus10009762.g ID=Lus10009762.BGIv1.0 annot-version=v1.0 ATGGAATTCGACTCGGACTCCAAGGTGTTTAGGCACAAGTTGACCAGGAGTAAAAATTACAATCACCGAGGGTTTGGACATGAGGAGGAGACTCTCAATC TCATGCACCAGGAATATACTAGTGACATCATAAAGACTCTGAAGGATAACAGATACGAGTGCACTTGGGGAAATGTTACTCGTTTGGAGGATATGGAAGT TGCAAACATTCCTATCAAGGAAGGGGAGAAACAGTTTGAAGTTGTGAACAATGGAGATGTGGTGATTTTGCTTGCTTTTAGAGCATTAGTTGATGAGATG TTGAAACTCAGTAACAAGTCTGCACATCGTCGATACAACGCTCTGCACTCGTTCCTCAAACTCGCTTTGTTGTTTAGTCTTATGTGTATGATTTACTTTA TGCAACTCTTTGTGAAGGTGTGGAACATTGTTGATAAACATAAGAAGGGGAGTATACTTCAATCATCCATGGGAAATATACCCATGAGGTAA
AA sequence Show only first row Show all	>Lus10009762 pacid=23178332 polypeptide=Lus10009762 locus=Lus10009762.g ID=Lus10009762.BGIv1.0 annot-version=v1.0 MEFDSDSKVFRHKLTRSKNYNHRGFGHEEETLNLMHQEYTSDIIKTLKDNRYECTWGNVTRLEDMEVANIPIKEGEKQFEVVNNGDVVILLAFRALVDEM LKLSNKSAHRRYNALHSFLKLALLFSLMCMIYFMQLFVKVWNIVDKHKKGSILQSSMGNIPMR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	0	1
AT3G52070			unknown protein		Lus10039603 [exp]	4.0	0.9033
AT5G05570			transducin family protein / WD...		Lus10027810 [exp]	4.8	0.9243
AT5G36930			Disease resistance protein (TI...		Lus10007810 [exp]	5.3	0.9008
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	5.5	0.9017
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	5.7	0.8986
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	7.2	0.9197
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	10.4	0.9079
AT1G05660			Pectin lyase-like superfamily ...		Lus10005304 [exp]	11.3	0.8378
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	12.2	0.8893
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	12.5	0.8941

Compare expression of checked genes

Lus10009762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.