Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47380 698 / 0 Protein phosphatase 2C family protein (.1) AT1G68410 514 / 0 Protein phosphatase 2C family protein (.1.2) AT1G09160 479 / 3e-168 Protein phosphatase 2C family protein (.1.2) AT4G31750 106 / 1e-25 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 105 / 4e-25 Protein phosphatase 2C family protein (.1) AT5G24940 106 / 6e-25 Protein phosphatase 2C family protein (.1) AT5G53140 106 / 6e-25 Protein phosphatase 2C family protein (.1) AT1G43900 105 / 6e-25 Protein phosphatase 2C family protein (.1) AT1G78200 102 / 2e-24 Protein phosphatase 2C family protein (.1.2) AT1G22280 97 / 1e-22 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006485 [exp] 825 / 0 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042659 [exp] 766 / 0 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 756 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10020666 [exp] 496 / 6e-175 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019012 [exp] 120 / 5e-30 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 112 / 4e-28 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 111 / 7e-28 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 112 / 9e-28 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 111 / 1e-27 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031200 [exp] 694 / 0 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 672 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G121600 [exp] 523 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 514 / 0 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021200 [exp] 482 / 3e-169 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 478 / 9e-168 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G013900 [exp] 110 / 4e-27 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.012G002100 [exp] 110 / 6e-27 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 108 / 2e-26 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.019G071600 [exp] 108 / 2e-25 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10009763 pacid=23178316 polypeptide=Lus10009763 locus=Lus10009763.g ID=Lus10009763.BGIv1.0 annot-version=v1.0 ATGTCAAACGCACGGGAGCATCATCAAACTATTCCGCTCTCAGTGTTGCTAAAGCGAGAATTGGCTCATGAGAAGATCGAGAAGCCTGAGCTGGTGCACG GACAAGCCAACCAGAGCAAGAAAGGAGAGGATTTCACCCTAATAAAAACTGAGTGCCAAAGGAACCTTTGCGATGGCGTTACTACGTACTCCGTTTTTGG GTTATTTGATGGTCACAATGGCTCTGCAGCTGCGATTTATACCAAGGAGAATCTTCTAAACAATGTTATATCTGCTATTCCTCAAGATCTTAATCGAGAG GAGTGGCTAGCCGCACTTCCCAGGGCATTGGTTGCTGGCTTTGTCAAAACAGATAAAGAGTTTCAAGATAGAGGACAACCATCTGGAACCACCGTCACCT TTGTGATCATTGAAGGATGGGTTGTAACTGTTGCATCTGTTGGTGATTCCCGATGTATACTTGAATCTGCTGAAGGTGATCTCTACTACTTGTCAGCAGA TCACAGGCTAGATTGCAATGCAGAGGAGAGGGATCGTATCACAGCAAGCGGGGGTGAAGTAGGGCGCCTGAATACTGGTGGTGGTGCAGAGATTGGTCCG CTGAGATGCTGGCCTGGTGGATTATGTCTCTCGCGATCCATCGGAGATATGGATGTTGGCGAGTTCATCGTTCCTGTTCCATATGTGAAGCAAGTTAAGT TGTCTACGGGTGGGGGTAGACTAATCATCTCAAGTGATGGAGTTTGGGATTCTTTGAGTGCGGAAACGGCTCTTGACTGTTGCCGTGGAATGCCACCAGA AGCTGCAGCATCACAAATAGTTAAAGAAGCCGTACACCCGAAGGGAATTAGGGATGACACAACGTGCATAGTGGTGGACATACTACCAATTGAGAAGCCA GCTGCTCCTCACCCAGCCCCAAGGAAACAAGTAAAAGGAGTATTGAGGTCTATGTTCCGGAAGAAGTCTTCTGAATCATCTTCTCATGCAGAGAAAGAAT ATGTTGAGCCCGATGTTGTGGAAGAGATGTTTGAGGAAGGTTCTGCTATGCTTTCAGAAAGGTTAGAAACAAAGTATCCATTAAGCAACATGTTCAAGTT GTTCATGTGCGCGGTGTGCCAAGTAGAGATAAGACCCGAGGAAGGTGTTTCAATACATGCCGGGGGGGCTTATGTGAGAAACCTACGCCCCTGGGATGGC CCTTTCCTTTGTCATAGTTGCCAAGACAAGAAAGAAGCCATGGAAGGGAAAAGACCATCTGGAGGTTTGTTTTTGTTTTATTGGTGA
AA sequence Show only first row Show all	>Lus10009763 pacid=23178316 polypeptide=Lus10009763 locus=Lus10009763.g ID=Lus10009763.BGIv1.0 annot-version=v1.0 MSNAREHHQTIPLSVLLKRELAHEKIEKPELVHGQANQSKKGEDFTLIKTECQRNLCDGVTTYSVFGLFDGHNGSAAAIYTKENLLNNVISAIPQDLNRE EWLAALPRALVAGFVKTDKEFQDRGQPSGTTVTFVIIEGWVVTVASVGDSRCILESAEGDLYYLSADHRLDCNAEERDRITASGGEVGRLNTGGGAEIGP LRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTGGGRLIISSDGVWDSLSAETALDCCRGMPPEAAASQIVKEAVHPKGIRDDTTCIVVDILPIEKP AAPHPAPRKQVKGVLRSMFRKKSSESSSHAEKEYVEPDVVEEMFEEGSAMLSERLETKYPLSNMFKLFMCAVCQVEIRPEEGVSIHAGGAYVRNLRPWDG PFLCHSCQDKKEAMEGKRPSGGLFLFYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	0	1
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	4.0	0.8402
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	5.3	0.8664
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	5.4	0.9012
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	5.5	0.8643
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	6.5	0.8994
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	8.0	0.8814
AT1G71140			MATE efflux family protein (.1...		Lus10000619 [exp]	9.8	0.7730
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	9.9	0.8507
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	9.9	0.8909
AT5G38700			unknown protein		Lus10010019 [exp]	12.0	0.8059

Compare expression of checked genes

Lus10009763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.