Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 221 / 3e-73 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 209 / 2e-67 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 115 / 3e-31 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 44 / 8e-05 Transcriptional factor B3 family protein (.1) AT4G33280 43 / 0.0001 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31680 42 / 0.0002 B3 REM8 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006483 [exp] 382 / 4e-136 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 213 / 2e-68 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 207 / 2e-65 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 133 / 6e-37 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 119 / 2e-31 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 119 / 6e-31 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 118 / 8e-31 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 115 / 1e-29 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 108 / 2e-27 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031700 [exp] 244 / 7e-82 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 228 / 1e-75 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 220 / 5e-72 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 209 / 1e-67 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 122 / 3e-32 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 121 / 3e-32 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 113 / 4e-31 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 118 / 6e-31 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 117 / 1e-30 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 116 / 4e-30 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10009764 pacid=23178315 polypeptide=Lus10009764 locus=Lus10009764.g ID=Lus10009764.BGIv1.0 annot-version=v1.0 ATGGTGGCGAAGGCGAAGCAATCAAACTACGAGGGACTTCGACTAAAGAGATTGGAAGAGAACAAGAAGCGAATGGAAGCACTAAATCTCCCTATGCTTT CTCAATCACTTCGTACCACCTCTCCTACACCTTCTCCGATTAAGCAATCCAAGCTTCGCCCTCCTGTGGTGGAGAAACAATTTGTTGTTGTCCGAAGATC CAGCCGTGTCGCCAATAAACCCTCACCTGTCTATGCTGAAGTTATTGTAGAGCGAGTGGTGATACCGAGAAGGGTGTCGTCAAAGACAAGGGATCTCTCC AACCGGGTGTATGCAAGTGATGAAGCCAGGGCAGAAGCTCTTGAGAAAGCAGAGAATTTGCAGTCTAGTTTGCAATCTCAGTCTCACTACCCTTCCTTTG TCAAGTCCATGCTTATATCCCATGTTTCTGGTGGATTTTGGCTGGGTCTTCCGGTGTGGTTCTGCAAACCAAACCTTCCAAAACGTGATGAAGTGATGAC TTTAATAGACGAGGAAGGTGATGAGTACCCGACGATATATCTTCCCAGAAAGACGGGACTGAGTGGTGGATGGAAAGGGTTTGCTGTAGCTCACAATTTG GCAGATGGGGATGCTTTAATTTTCCAATTGATCACCCCTACATCATTCAAGGTCCCCCTCCTTCTTTCTCTTGCTGCAGTATTTTCTTGA
AA sequence Show only first row Show all	>Lus10009764 pacid=23178315 polypeptide=Lus10009764 locus=Lus10009764.g ID=Lus10009764.BGIv1.0 annot-version=v1.0 MVAKAKQSNYEGLRLKRLEENKKRMEALNLPMLSQSLRTTSPTPSPIKQSKLRPPVVEKQFVVVRRSSRVANKPSPVYAEVIVERVVIPRRVSSKTRDLS NRVYASDEARAEALEKAENLQSSLQSQSHYPSFVKSMLISHVSGGFWLGLPVWFCKPNLPKRDEVMTLIDEEGDEYPTIYLPRKTGLSGGWKGFAVAHNL ADGDALIFQLITPTSFKVPLLLSLAAVFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	0	1
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	2.6	0.9513
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	6.7	0.9142
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	7.1	0.9446
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	7.5	0.9435
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	8.7	0.9462
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	8.8	0.8941
AT4G02800			unknown protein		Lus10022037 [exp]	10.7	0.9285
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	11.5	0.9112
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	11.5	0.9175
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	17.0	0.9184

Compare expression of checked genes

Lus10009764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.