Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33380 310 / 5e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006482 [exp] 197 / 5e-61 AT4G33380 194 / 9e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031900 [exp] 358 / 5e-124 AT4G33380 331 / 3e-113 unknown protein Potri.002G127700 [exp] 327 / 9e-112 AT4G33380 300 / 8e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009765 pacid=23178317 polypeptide=Lus10009765 locus=Lus10009765.g ID=Lus10009765.BGIv1.0 annot-version=v1.0 ATGGCGAGGGGAGTGAAATGGAGTTGTTCGTACAAGAAGACGACTCTCATCGTTTGTGCCGTCAACATCATCATAGCTCTCTATGTTCTTCGCTCTCTGT ACGGTTCACTTTACCTCTACTCCAACGATGATTTAGCTTACGCTGTGAATTACACGCCAGATCAGATTAGTAAGACTGAAGAATCAATTCGGATTCGTAG AGCTAGTGAGCCGATTGCGCTTAAGAAGTTGGTAAAACAACTTAAAAGGGAGTTCGGAGGACAAGATACGGTAGTGGAATTGCCACCGGAGGTCAAACAT AAATTAACTCAAGAGATTCTTCAGCGATTGAGAAGCTTGTCTGGAAATGCCAGTATCAGTGAGCAGCGAGAAGCAGTTGAAAATTGGCGCAATGAGAAGC TAGTAGAAGTAAAGCAGTCAGCTAATTTAGATAGGGGAGGCAATTTAACCTCTCTTCAGGAAGAAGCTGAAATTCTGGCAAGAGCCTTGGAATCTGGCTG GGCAGAGCTTTCAGAGGACATGGGACTTTGGATACCTGGTGAAATCACTAACATAGAGCACGATGATAGACTGCATGGTGAAGAGGAGGATGAAGAAGAG GTTTTGCCAGGCCGACCCCTTCCAGCTGAATGCAATGCAGAGCTTCATTCAGATTATGATGGTGCGGCTGTGTGGTGGGGACCTCACCATCCTAAAGAAA GTGCTGCTGATTGCTGTCAAGCATGTTTGGATCAGGCTAAACGTGCTAAACCAGGTGAAATGCAATGCAACGTATGGGTCTATTGTCCGGCTGAGAATGG ATGCTACTCCCCTGACATTTACGAACATAAGAATATGGAGTGCTGGCTTAAATATGCAGAGAAACCCAAACTCAATTTCAAGAACAGGTACTCTGAGTCA TACAGAAATTCCCACCCTAATGCTCCGGTGGTTGTTCCCTGGGTCTCTGGCGTCATCAGATAG
AA sequence Show only first row Show all	>Lus10009765 pacid=23178317 polypeptide=Lus10009765 locus=Lus10009765.g ID=Lus10009765.BGIv1.0 annot-version=v1.0 MARGVKWSCSYKKTTLIVCAVNIIIALYVLRSLYGSLYLYSNDDLAYAVNYTPDQISKTEESIRIRRASEPIALKKLVKQLKREFGGQDTVVELPPEVKH KLTQEILQRLRSLSGNASISEQREAVENWRNEKLVEVKQSANLDRGGNLTSLQEEAEILARALESGWAELSEDMGLWIPGEITNIEHDDRLHGEEEDEEE VLPGRPLPAECNAELHSDYDGAAVWWGPHHPKESAADCCQACLDQAKRAKPGEMQCNVWVYCPAENGCYSPDIYEHKNMECWLKYAEKPKLNFKNRYSES YRNSHPNAPVVVPWVSGVIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33380			unknown protein		Lus10009765 [exp]	0	1
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10028719 [exp]	4.5	0.8910
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	5.3	0.8500
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	5.5	0.8811
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	6.6	0.8382
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	6.7	0.8660
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	7.7	0.8890
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	9.8	0.8804
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10021024 [exp]	10.7	0.8334
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	11.5	0.8908
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	12.0	0.8774

Compare expression of checked genes

Lus10009765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.