Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006482 [exp] 229 / 1e-76 AT4G33380 194 / 9e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032100 [exp] 150 / 9e-48 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009766 pacid=23178327 polypeptide=Lus10009766 locus=Lus10009766.g ID=Lus10009766.BGIv1.0 annot-version=v1.0 ATGGGTAGTGAAGAGGGAAGCTCAGTGCAAGATTGGGGCGTATTCGATGGAATAAAAGGATTCTCATCATCCCCAGAAACCCTAATGGCTGAGATCGACA CTGCAATTACTAAACTGGAATATGAGAGATCCACTGCTCATCTGGACTCCACTTTATCATCTGAACTGGGAGGGATTGAAGCCTCCTCTGGCAGTGAATA TGATGTTGGGATTGCAGACGAGGCTTATAGGGCTGGGTGTGCAGCTCTGGCTGTTGGAAAGCTTGACCAGGCTCTCCAATCTTTAAACGTATCTCTCTCC AAGTGTCCCCCTGAGAAGAAATCTGCTGTTGCCAAGCTTCAGTCACTCATTTCCATTACATCCCACCAACTTCACCAGAGTTAA
AA sequence Show only first row Show all	>Lus10009766 pacid=23178327 polypeptide=Lus10009766 locus=Lus10009766.g ID=Lus10009766.BGIv1.0 annot-version=v1.0 MGSEEGSSVQDWGVFDGIKGFSSSPETLMAEIDTAITKLEYERSTAHLDSTLSSELGGIEASSGSEYDVGIADEAYRAGCAALAVGKLDQALQSLNVSLS KCPPEKKSAVAKLQSLISITSHQLHQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009766 [exp]	0	1
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	6.7	0.5827
					Lus10009807 [exp]	17.9	0.5579
					Lus10031895 [exp]	31.3	0.5519
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028313 [exp]	57.5	0.4889
					Lus10009804 [exp]	77.1	0.5044
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10018264 [exp]	89.4	0.4990
AT2G27410	B3		Domain of unknown function (DU...		Lus10000815 [exp]	90.7	0.4824
					Lus10037724 [exp]	96.3	0.4928
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10015875 [exp]	127.7	0.4762
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	137.4	0.4413

Compare expression of checked genes

Lus10009766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.