Plant FIBer expression Database

Lus10009767 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G47410 92 / 2e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006481
[exp]
248 / 5e-85 AT1G47410 105 / 5e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G127800
[exp]
194 / 7e-63 AT1G47410 82 / 2e-19 unknown protein
Potri.014G032300
[exp]
178 / 9e-57 AT1G47410 105 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10009767 pacid=23178328 polypeptide=Lus10009767 locus=Lus10009767.g ID=Lus10009767.BGIv1.0 annot-version=v1.0
ATGGGTGTGTTCTATCAGGAAGAAGAGCCATCCCCACCAAACCCTTCAAAGAAATGCAAGCTCCTCCTGGCTTCAACTCTCAGAGATGTTTTCTCCAACT
GCACATCTTGCGGTGGCCGCCTCTGCAGTTCAAGCCCTCTCCCGGATGAAGACTATGTTGCCGATCTGGACGACCAACAGGAAGTTGTGGTTTCAGCAAT
CAGGAGCAGAGCCATGGAGAAGTCCAAGCACAAGGCTTTTGTTATTACTGACAACTTTTCAGGGGAATTGTTCTCGAGTCCGAGACAGTTGGAGCTTAAA
CAAAAGAATGGAGATGATGTTGATGCAGATCAGGATGAATTCTTCTCTGTAGGGAGTTACCTCTCCTGTTGTTCGAGTGTTCTGAGCCGGGAAGAGTTTA
TGTCTATCAAGACCAACTTGTCGAGATGTTCAAGCTTCAGCAAGGTGGAAGAGTTTCCGAGTTTTCAGAGGAGGGTATCCATATTGCAGGAGCTTTGCCA
CTGCGAAGGGTGGCCTTTTGGACTATGCAGAAAGGCTGTTTTGCTTCCACCTCTGCCCAAATCTCCTTCAGAGTCCTGGTTATGGCGGAAAGGCACTAGA
TCGGTCAGACTTCCTTGA
AA sequence
>Lus10009767 pacid=23178328 polypeptide=Lus10009767 locus=Lus10009767.g ID=Lus10009767.BGIv1.0 annot-version=v1.0
MGVFYQEEEPSPPNPSKKCKLLLASTLRDVFSNCTSCGGRLCSSSPLPDEDYVADLDDQQEVVVSAIRSRAMEKSKHKAFVITDNFSGELFSSPRQLELK
QKNGDDVDADQDEFFSVGSYLSCCSSVLSREEFMSIKTNLSRCSSFSKVEEFPSFQRRVSILQELCHCEGWPFGLCRKAVLLPPLPKSPSESWLWRKGTR
SVRLP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G47410 unknown protein Lus10009767
[exp]
0 1
AT5G10930 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.... Lus10041653
[exp]
1.4 0.9622
AT2G37740 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) Lus10024875
[exp]
2.0 0.9472
AT1G47410 unknown protein Lus10006481
[exp]
2.4 0.9421
AT2G37900 Major facilitator superfamily ... Lus10024340
[exp]
2.4 0.9620
AT5G63130 Octicosapeptide/Phox/Bem1p fam... Lus10017947
[exp]
2.8 0.9356
AT3G52105 unknown protein Lus10012208
[exp]
3.7 0.9186
AT1G62710 BETAVPE, BETA-V... beta vacuolar processing enzym... Lus10032236
[exp]
6.9 0.9513
AT4G23496 SP1L5 SPIRAL1-like5 (.1) Lus10024667
[exp]
7.3 0.9342
AT5G20650 COPT5 copper transporter 5 (.1) Lus10040925
[exp]
7.7 0.9145
AT4G12320 CYP706A6 "cytochrome P450, family 706, ... Lus10024586
[exp]
9.4 0.9133

Lus10009767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.