Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47420 227 / 3e-75 SDH5 succinate dehydrogenase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021742 [exp] 341 / 2e-120 AT1G47420 270 / 1e-91 succinate dehydrogenase 5 (.1) Lus10042661 [exp] 340 / 5e-120 AT1G47420 268 / 9e-91 succinate dehydrogenase 5 (.1) Lus10006480 [exp] 248 / 6e-85 AT1G47420 132 / 7e-39 succinate dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032400 [exp] 258 / 1e-87 AT1G47420 281 / 6e-96 succinate dehydrogenase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009768 pacid=23178331 polypeptide=Lus10009768 locus=Lus10009768.g ID=Lus10009768.BGIv1.0 annot-version=v1.0 ATGAATAAGATGTTGGCGCTGAGGTCTGTATGTCGAGCAGCTTCTCTTAGACCTTCGATGAACTTGTCAGCTATAATCACCAACCATCTTTTACACCATC ACACGCCTCCCCGATCCCTGTTCACCCTTTCTTCCGCTGCCAATCGGCTCCCTTCCGCACACTTGCCTGAAGTTAAAGACCCTGATGTCTTATGTGCCTT CAAGGACTTGATGGCTGCAAGCTGGGATGAACTAGATGTGACTGCTGTCCATGATGTCAAAAATGCATTGTCCAAGAGCTCCAATGACAACCCTGGTCAA GAAGTGTTGAAGAATGTTTTCCGAGCATCTCAAGCTGTGGAGGAATTTGGTGGGATGATCATGACTTTAAAGATGGAGCTAGATGACAGTATTGGGATGA GTGGTGAGCCGTTATCAGATGATTATGCTAAGGCGATCCATACTTTTTTTGAACGGTATTCTACGTATTTGGATTCATTTGGACCTGATGAGGCTTACCT GCGAAAGAAAGTAGAGATGGAGTTGGGTTCAAAGATGATATTCTTGAAGATGAGATGTGCTGGCCTCAGATCAGATTGGAGCAAGGTTTCTCTGATAGGC ACGTCTGGACTTGCTGGATCTTATGTTGAACAAAGAGCTTAG
AA sequence Show only first row Show all	>Lus10009768 pacid=23178331 polypeptide=Lus10009768 locus=Lus10009768.g ID=Lus10009768.BGIv1.0 annot-version=v1.0 MNKMLALRSVCRAASLRPSMNLSAIITNHLLHHHTPPRSLFTLSSAANRLPSAHLPEVKDPDVLCAFKDLMAASWDELDVTAVHDVKNALSKSSNDNPGQ EVLKNVFRASQAVEEFGGMIMTLKMELDDSIGMSGEPLSDDYAKAIHTFFERYSTYLDSFGPDEAYLRKKVEMELGSKMIFLKMRCAGLRSDWSKVSLIG TSGLAGSYVEQRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	3.9	0.7596
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	5.7	0.8474
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	7.3	0.7944
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	11.3	0.8214
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	14.1	0.7970
AT1G03290			unknown protein		Lus10028006 [exp]	19.4	0.7302
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042264 [exp]	23.7	0.7967
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	36.0	0.7177
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	37.5	0.7396
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	45.3	0.7198

Compare expression of checked genes

Lus10009768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.