Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77850 459 / 9e-156 ARF ARF17 auxin response factor 17 (.1) AT4G30080 343 / 8e-110 ARF ARF16 auxin response factor 16 (.1) AT2G28350 320 / 2e-100 ARF ARF10 auxin response factor 10 (.1) AT1G59750 204 / 2e-57 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 197 / 5e-55 ARF ARF9 auxin response factor 9 (.1.2) AT2G33860 193 / 7e-54 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G37020 194 / 2e-53 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 191 / 1e-51 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19220 191 / 1e-51 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G62000 191 / 1e-51 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024753 [exp] 1043 / 0 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10024754 [exp] 1000 / 0 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10026510 [exp] 357 / 6e-115 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 339 / 1e-108 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 337 / 1e-107 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 329 / 1e-104 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 325 / 8e-103 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10016091 [exp] 207 / 5e-62 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10007440 [exp] 196 / 3e-54 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089900 [exp] 628 / 0 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 603 / 0 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.004G211700 [exp] 355 / 9e-114 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 353 / 3e-113 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.008G039000 [exp] 350 / 1e-111 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 345 / 5e-110 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 344 / 1e-109 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 339 / 8e-108 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.003G001000 [exp] 203 / 4e-57 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.015G105300 [exp] 202 / 1e-55 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10009770 pacid=23175344 polypeptide=Lus10009770 locus=Lus10009770.g ID=Lus10009770.BGIv1.0 annot-version=v1.0 ATGGTCGACCGCCGGATCTGGCAATCCTGTGCTGGTTCCTCCGTCCGCATCCCTACTCTCAATTCTAGGGTCTATTACTTCCCCCAGGGTCACTTCGAGC AGTCTTCTTCCTCCACTCTACCTCTCCTCTCCTCTCTCGTTTTGTCCCGCCCTATGATCCTCTGCCGCCTTTCCTCCATCCAATTCCTCGCCGATCCTGT CACCGACGAGGTCTACGTCAAGCTCTTTCTCCTTCCTCTAGATCCTTCTTCCCTCAATGCTGCTGCGTTGCCTCTTTTGGAGCCCTCTCCTACTGCTGCT TCTTCTTCTTCTGCTGCTGCTGCTAACGATGATGGAATTATGGCCTACGCCAAGGTCTTGACCGCTTCCGATGCCAACAACGGTGGAGGCTTCTCCGTTC CCAGGTTCTGTGCTGACTCCATATTCCCGCCATTGAACTACGACGCCGACCCTCCTGTCCAAACCCTAAGTGTCTCCGACGTCCACGGCATCAAGTGGAA TTTCCGCCACATCTACCGTGGCACTCCCCGCCGCCACTTACTCACCACTGGTTGGAGTAAGTTTGTTAACAGCAAGAAGTTGATCGCTGGTGACTCTGTT TTATTTATGAAGAATTTTAGAGGAGAGATGTTCATCGGAGTCCGCAGGGCTGCTAGGTCTAACAACGCCGCCAATTTCGCGCGGTGGCGGGACCATTTTG GTACTGGAGGAGATGGCAAAGTCAAGCTTAAGGAAGATGGATGCTCTAGGACGAGTGCTAGAGGGATGCTGTCACCGGAGACCGTCGCCGAGGTCACCGA GAGGGCAGCCCAGGGATTGCCATTTGAAGTGGTGTATTACCCCAGGTCATGGTCCTTTTCTGATTTCGTTGTCAATGCTGATGTGGTGGAGGCTGCTCTC AGTATGTTCTGGTCGTCGGGGACCAGAGTTAAGATGGCTGTCGAATCAGAGGACCTCTCAAGGGCTACGTGGTTTCAAGGCACTGTTGCTTCTGCCACAG TTCCAGGTTGTGGACCATGGCAAGGATCTCCTTGGCGCATGCTTCAGATCAAATGGGATGAACCCGAAGTTCTTCAGAGTGCCCAGAGAATTAGCCCATG GCGAGTTGAATTTGTTTCAACAAATTCATCCTTAGGTACTGGGATTCCGCCAGCCAAGAAATTGAGATATCCAGACAAGTCTGAGTTTCTGATAGATGGA GAGAGAGATCTTCGCTTTCCTTTGTCAGGGCTCGGGAATTCAACAATGGCTCAGATGAATCAGCCGCTGTTGAGTTATAACAATTTTCCTGCTGGCATGC AGGGAGCCAGGCATTATTCTTTCCCCCCCTTTGAATTATCGAACTCTGTGAGTGACAATGGTCTCCAGATAGGTGCTGATACTTGCGTGACAAACATTAT GGTGCCTAAGATGAGCAGCGTCTCCACCGAGCTGAATATTGGTAGTTCAAAATCTGAAAACTTGTCTCCAGACAGTCAGAGCAGTGTGCAGTCTTTTAGC ACTGAACTTGTAGGAAATCAAGGTTGCACATCCAGAAACTGGGGCACTAGTTCGTTTCAGTTATTTGGTAAAATGATTCATATGAATCAGGCAGTTGAAA GAGGTTGTGATGTAGTGAGCTGCTTGGAGGATGAGAATGCTAAAAAGTGTAAGGATAATCAAGGTGTAAACCAGCTGCTTGACCTGTCGCTGACCTCGTC ATATACTGAACTACTCAACAAAATAGATGTCCAGTGCCAAAGATCTGCAGGTCTTGAGGCATATGAACAATCCATTTTGTGA
AA sequence Show only first row Show all	>Lus10009770 pacid=23175344 polypeptide=Lus10009770 locus=Lus10009770.g ID=Lus10009770.BGIv1.0 annot-version=v1.0 MVDRRIWQSCAGSSVRIPTLNSRVYYFPQGHFEQSSSSTLPLLSSLVLSRPMILCRLSSIQFLADPVTDEVYVKLFLLPLDPSSLNAAALPLLEPSPTAA SSSSAAAANDDGIMAYAKVLTASDANNGGGFSVPRFCADSIFPPLNYDADPPVQTLSVSDVHGIKWNFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSV LFMKNFRGEMFIGVRRAARSNNAANFARWRDHFGTGGDGKVKLKEDGCSRTSARGMLSPETVAEVTERAAQGLPFEVVYYPRSWSFSDFVVNADVVEAAL SMFWSSGTRVKMAVESEDLSRATWFQGTVASATVPGCGPWQGSPWRMLQIKWDEPEVLQSAQRISPWRVEFVSTNSSLGTGIPPAKKLRYPDKSEFLIDG ERDLRFPLSGLGNSTMAQMNQPLLSYNNFPAGMQGARHYSFPPFELSNSVSDNGLQIGADTCVTNIMVPKMSSVSTELNIGSSKSENLSPDSQSSVQSFS TELVGNQGCTSRNWGTSSFQLFGKMIHMNQAVERGCDVVSCLEDENAKKCKDNQGVNQLLDLSLTSSYTELLNKIDVQCQRSAGLEAYEQSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	0	1
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	1.0	0.8932
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	2.0	0.8458
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	3.5	0.8191
AT2G40480			Plant protein of unknown funct...		Lus10029055 [exp]	3.6	0.8169
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	4.0	0.8342
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	4.2	0.8406
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	5.2	0.8288
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	5.9	0.8307
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10021317 [exp]	6.8	0.7886
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	7.1	0.8238

Compare expression of checked genes

Lus10009770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.