Plant FIBer expression Database

Lus10009771 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16730 577 / 0 HEB2 hypersensitive to excess boron 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024756
[exp]
1229 / 0 AT3G16730 610 / 0.0 hypersensitive to excess boron 2, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G010480
[exp]
672 / 0 AT3G16730 634 / 0.0 hypersensitive to excess boron 2, unknown protein
Potri.008G219100
[exp]
665 / 0 AT3G16730 611 / 0.0 hypersensitive to excess boron 2, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06278 CNDH2_N Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
Representative CDS sequence
>Lus10009771 pacid=23175360 polypeptide=Lus10009771 locus=Lus10009771.g ID=Lus10009771.BGIv1.0 annot-version=v1.0
ATGAATACCCACAAAGATAATTCATCTAACAGAATCCATACAGTTCAGGCCGAGCGAGACCTAGAGGCGAATTGGGAGGTCGATCTTGCCAGGAAGCTCG
AGGACTACCTGCTCAAGATTTGTTCTGGTGAAATTTCTACAACTGAAGAGGACGATGCTCACATATCCATCAATTTCGCTGAAGCTGCTTTACTGCTTCA
GGGTTCGGTTCAGGTGTATAGCAGGAAAGTTGAGTATCTTTACAACTTGGTTTTACATGCTTTGGATTTCCTCTCTGAGAAGAGGCAGCAAGGAGAGTTA
GAAGGATCGACCGGGCAACCTGAAAAGGGTGCTTCAAGTTCCGGTATTAATGATGAAGATGATCGATTTTGGAACTTAGACGACATCCATGTGGAACCGA
GAAATTGTTTGGATACTTCAACCAGTAAAGATGCTTGCTTCTACCATTTCACAAAGCCACCGGCTAATTTGGTCGTTCTTGAAGCTGATTGCTTGGATAC
CAGTGGCGATGGAGGGGAACTGGAGTCATATCTATTAGCTTGCAGTGATCTCTATCAGGATTTTATCCTCTTGGACCCGTGTGATTCTCCTTCAGTAAAT
GAATATGTAGAAGAGGGGGGTACTGGAGTTGGAACCACATACAAGAGAAGCTCACCTTGTAAAGGCGTTCATTCCTCCACAAAACGCACTGGTGCAACAG
CACGGAGGTCATCTCTTGGAAAGAACCGCGATGCTCATTGCAATCAGTCTTCAATCCCTGATTGTGGTTTGCAGGACGATAAATGTGATGCAAATTCTGG
ACCTTCTAAAGATGGTAACTTTTCAGGTTGTAATGAAGGGTTTGATATGGATGATATGTATACTTCACCTGGAAACTTGGATGACATAGATTTAGATGAA
CATGAAACTGATCCATGGAAGCCTTTGAATCCTCACGAACCTGGGGACTTAAAAGTAAAACCTTTCAAACGAGTAGCTCCAAGAAAGCATGCGGGGAACG
TGCCAAGGCAGACATCTGTGGCTGCATTATTTCCACTTGCAAAGATGTATGGCCCTGTTAGTTCTGAGCTCAAAGGCATATGGGAAATACGCCAGAAGAC
CTGCAATGAGCACAGGAACTCACAGTCCCAATCTGCCCCTTTGTATCAAAAGTTACGAGAATCACTTGCTGGTGGAGGGAAGAACAACATGGATTCTATT
CATCAGTCCAGCAATGAAAATTGGGATAATGAAGATGACAATGGTGTCCCTGGTTTTGATGAACCATTTAGTGAAATGCCAGAATCTACATTTATGGATG
AAGATTTGCCTCGTCAGCATGATAAGGATTTTAACTCTGCTTCTCGCTTTGATGCTGATGACCCCTTCGGACAAGGAGAACCAAGTTCCCAAGCAAGCCT
GGAGGATCTTTGTCGTTCGCACCTTGATGCTCTGCTTGCTAATATAGCTGAAACTGAGAAGCAGACAGAGCTAGCTGCTCGGGTGTCGTCATGGAAACAG
AAAATTGAGCATAACCTCGAAGTGCAAGATTCACGGACGCCATTTGACATCCATGCCTATGGTGAGAGAATTATGGACAGATTATCTGTTGAATCAGAGA
GGGAGAACATCAGATCTTTTGCTGATATTGTCAGCGGCCAAGAAAAGCATGATGTTGCCCGTACCTTCTCTGCTATGCTTCAGTTGGTGAACAATGGAGA
TATTGATCTGGATAAGAATGGAAACTCAGTATGTTACACCGTTGTGAACCCCTTCCGTGTTAGGCTCCTCAAAAAGGATGGGAGACAACCGGAGAGAAAG
TGTAAGATGTCGAAAAAGAGAGTGAGATCGCCTTTGAGGAAAGGACCCAACAAAAAGGAAGGTGAGGACAAAATTCAGAGTAAGAGATTCCCAAGCAGCA
GCAATTCACCATCAGAAAATGGATCATCTATAATTAGAACAAGGTCCAACTCCAAGTTTGCTGCAAAGCTTCGGAAGGTTGGTGAGGTAAGGTGCAACAG
TCCAGAGGGAAAGAGGAGAAGAGGATCACAAGTAATGACTTGA
AA sequence
>Lus10009771 pacid=23175360 polypeptide=Lus10009771 locus=Lus10009771.g ID=Lus10009771.BGIv1.0 annot-version=v1.0
MNTHKDNSSNRIHTVQAERDLEANWEVDLARKLEDYLLKICSGEISTTEEDDAHISINFAEAALLLQGSVQVYSRKVEYLYNLVLHALDFLSEKRQQGEL
EGSTGQPEKGASSSGINDEDDRFWNLDDIHVEPRNCLDTSTSKDACFYHFTKPPANLVVLEADCLDTSGDGGELESYLLACSDLYQDFILLDPCDSPSVN
EYVEEGGTGVGTTYKRSSPCKGVHSSTKRTGATARRSSLGKNRDAHCNQSSIPDCGLQDDKCDANSGPSKDGNFSGCNEGFDMDDMYTSPGNLDDIDLDE
HETDPWKPLNPHEPGDLKVKPFKRVAPRKHAGNVPRQTSVAALFPLAKMYGPVSSELKGIWEIRQKTCNEHRNSQSQSAPLYQKLRESLAGGGKNNMDSI
HQSSNENWDNEDDNGVPGFDEPFSEMPESTFMDEDLPRQHDKDFNSASRFDADDPFGQGEPSSQASLEDLCRSHLDALLANIAETEKQTELAARVSSWKQ
KIEHNLEVQDSRTPFDIHAYGERIMDRLSVESERENIRSFADIVSGQEKHDVARTFSAMLQLVNNGDIDLDKNGNSVCYTVVNPFRVRLLKKDGRQPERK
CKMSKKRVRSPLRKGPNKKEGEDKIQSKRFPSSSNSPSENGSSIIRTRSNSKFAAKLRKVGEVRCNSPEGKRRRGSQVMT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16730 HEB2 hypersensitive to excess boron... Lus10009771
[exp]
0 1
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Lus10038384
[exp]
3.5 0.9537
AT4G21820 binding;calmodulin binding (.1... Lus10007665
[exp]
6.3 0.9506
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10011840
[exp]
6.5 0.9527
AT5G48600 ATSMC4, SMC4, A... ARABIDOPSIS THALIANA STRUCTURA... Lus10005240
[exp]
7.7 0.9532
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10008729
[exp]
10.0 0.9433
AT1G67040 unknown protein Lus10033565
[exp]
10.4 0.9447
AT1G26330 DNA binding (.1.2) Lus10000645
[exp]
11.2 0.9483
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Lus10024822
[exp]
12.0 0.9497
AT3G16730 HEB2 hypersensitive to excess boron... Lus10024756
[exp]
14.5 0.9360
AT5G16850 ATTERT telomerase reverse transcripta... Lus10026080
[exp]
14.7 0.9197

Lus10009771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.