Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08460 252 / 1e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 228 / 2e-74 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 210 / 8e-67 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT3G24740 162 / 2e-47 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 152 / 2e-44 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 143 / 3e-40 Protein of unknown function (DUF1644) (.1) AT1G15430 121 / 5e-33 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 107 / 8e-28 Protein of unknown function (DUF1644) (.1) AT2G26050 91 / 6e-22 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024758 [exp] 439 / 4e-157 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 237 / 3e-77 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 238 / 5e-77 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 233 / 1e-76 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 181 / 4e-55 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 178 / 5e-53 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10019436 [exp] 170 / 9e-51 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10043292 [exp] 169 / 2e-50 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10026950 [exp] 158 / 1e-46 AT4G31410 363 / 2e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088700 [exp] 288 / 4e-97 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 261 / 6e-87 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 244 / 5e-80 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 243 / 6e-79 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G070500 [exp] 170 / 9e-51 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 166 / 3e-49 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.003G060800 [exp] 167 / 1e-48 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 164 / 2e-48 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 155 / 2e-45 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 154 / 1e-44 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10009772 pacid=23175356 polypeptide=Lus10009772 locus=Lus10009772.g ID=Lus10009772.BGIv1.0 annot-version=v1.0 ATGGAAAAAACGAATAGGGCTCAGAAGCATCGTACCTCAAAGGAAAGCCGTTGTAAAGACGCAACCAAAAAGGAGTGGGAAGGTGCAACATGCTCAGTTT GTCTGGAGTACCCTCACAACGCTATACTCCTGCTGTGTTCTTCCTATGGCAAGGGTTGTCATCCATATATGTGTGCTACTGGACGACAGTTTTCCAACTG TCTTGAGCAGTACAAGAAAGCCTACACAACCGAAGTGATGCAACAGCAGGACAGGTCAGGACACCATTTGAATTTGATCTCAGGCGGCATGCAGCTGAAG GAGAAGGTACAAGTTCCAGAGCTTCTATGCCCGCTTTGTCGAGGACAGGTGAAGGGTTGGACGGTAGTGGAAGCAGCTCGGAAGTATCTAAATGGGAAAA AAAGATCGTGCATGCTGGATAACTGTTCATTTGTTGGATCTTACGGACAACTAAAGAAGCACGTGAAAGCAAAGCACCCATTGGGATGTGCCCGAGCAGT GGATCCTGTGCTTGAAAAGAAATGGAAGGCTCTGGAAGTTGAGAGAGAGCGGAATGATGTGATAAGTACGGTTCTATCATCGACACCTGGAGCAATGGTG CTTGGAGATTACGTGATTGAGCCAGGTGCTGCTGGAATGTACAATGACTACGATGACGATGATGAGGATGAGCTAGTGGATGATGATGGTTTCTACCCTT TGTTTGGTGGCTATAGGATGAGACATGCAGCATCAGCTAGCTCTGCAGCATTACCAGGGAGCAGTCTCCACAGAATGATTTTTGGAAGGACTCGTAGGTA TGGACGAGGTGACAGACGTGGGTTTCGCAGGTAG
AA sequence Show only first row Show all	>Lus10009772 pacid=23175356 polypeptide=Lus10009772 locus=Lus10009772.g ID=Lus10009772.BGIv1.0 annot-version=v1.0 MEKTNRAQKHRTSKESRCKDATKKEWEGATCSVCLEYPHNAILLLCSSYGKGCHPYMCATGRQFSNCLEQYKKAYTTEVMQQQDRSGHHLNLISGGMQLK EKVQVPELLCPLCRGQVKGWTVVEAARKYLNGKKRSCMLDNCSFVGSYGQLKKHVKAKHPLGCARAVDPVLEKKWKALEVERERNDVISTVLSSTPGAMV LGDYVIEPGAAGMYNDYDDDDEDELVDDDGFYPLFGGYRMRHAASASSAALPGSSLHRMIFGRTRRYGRGDRRGFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	3.0	0.8754
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10038835 [exp]	6.7	0.8432
AT1G66510			AAR2 protein family (.1.2.3)		Lus10009118 [exp]	7.7	0.8218
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	8.0	0.8415
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	8.5	0.8194
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	8.5	0.8283
AT1G64385			unknown protein		Lus10033958 [exp]	9.2	0.8703
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	9.3	0.7970
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	9.5	0.8392
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	9.5	0.8259

Compare expression of checked genes

Lus10009772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.