Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60300 294 / 2e-97 RWD domain-containing protein (.1.2) AT4G13490 42 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024759 [exp] 562 / 0 AT3G60300 311 / 3e-104 RWD domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138000 [exp] 316 / 2e-106 AT3G60300 340 / 8e-116 RWD domain-containing protein (.1.2) Potri.014G048000 [exp] 152 / 1e-44 AT3G60300 163 / 6e-49 RWD domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009773 pacid=23175346 polypeptide=Lus10009773 locus=Lus10009773.g ID=Lus10009773.BGIv1.0 annot-version=v1.0 ATGGCGCACGAAGAAATTCTGTTAGAAGTAGAGGCCGTTCAAGCGGTGTACGGAGATGATTGCGTCGTCCTCAATCCCTTCCCTCCTTATCTCCACCTCC ACTGTAAGCCGCGAACCGCCGAGATTTCTTCTCAACAGTTTGTGGAAGCATTGATCAGCATCAGAGCAGGTGTACAGATTGTATTTACTTCTTCAACGTT CATTAGTATGTCATGGAGAAAAGCTCAACCTGCTACTAACCTGGTTAATTTCCTTTTCAAGTATCCAGAGGAACCACCCAGTATCATTATCATAGATTCC AAGGGTCTTGATGAACTAAGGCAAAAGGTTCTATTAACCAGTATACGTAACAAAGCACTAGAGCTCTTTTCAGGCTTCATGCTGGTAGCACTGTGTGAGG CAGCAGTGGAGCAGCTCTCCATCATGAATAGCCCGGATGGTGATTGTCCATTGTGTTTATACCCTTTGGTTCAAGAAAAAGAAGAGCGTGAAATCTTGCC ATTTATGAAGTTGATGTCATGTTTTCATTGCTATCACAGTGAATGCATTATAAGGTGGTGGACTTGGCTTCAAAAGCAGCAGGAGAACACGAGTGCTTCC TCAATCAGAGTTGAAAATAAGATGGCGGCAGAGAAGAGCATGGCCCAATGTCCAGTGTGTCGAAAGGTTTTCCATGCCAAGGATTTGAAACATGTGCTTG ATTTGGTTGGAACTCATTCCTCTCACTTGAGTTTGATGAAAAAGGAAGGTAAGGGTGACGAAGAGGAAGAAGCGGTGGTTGATTGTGAGTCGGAGCAAAT TAGAAGAGAGAAATATGAGGCTATACTAAAGTTACAAGAAGAAAAGAAAGGGCTGATAGAACTAAAAAAGAGTATTGCGGTTGTGCCTGGCATGTTTCTT CCACGGCCTACTACTACTACGACTGCTACTACTACTATGACATCAGAGCAACAAACAGAAATGCCAACTACTGATGATTCTTCAGAGCGGCATGGTGGCA TAGCTAGGCGACGGAGGAAAAACTACCGTAATCAGCAGCACAACTCTCAAAGACAGGTGGTGGTGAAGCAACAATGGACAAGGAAAGGAAACGCTACATC AAATTGA
AA sequence Show only first row Show all	>Lus10009773 pacid=23175346 polypeptide=Lus10009773 locus=Lus10009773.g ID=Lus10009773.BGIv1.0 annot-version=v1.0 MAHEEILLEVEAVQAVYGDDCVVLNPFPPYLHLHCKPRTAEISSQQFVEALISIRAGVQIVFTSSTFISMSWRKAQPATNLVNFLFKYPEEPPSIIIIDS KGLDELRQKVLLTSIRNKALELFSGFMLVALCEAAVEQLSIMNSPDGDCPLCLYPLVQEKEEREILPFMKLMSCFHCYHSECIIRWWTWLQKQQENTSAS SIRVENKMAAEKSMAQCPVCRKVFHAKDLKHVLDLVGTHSSHLSLMKKEGKGDEEEEAVVDCESEQIRREKYEAILKLQEEKKGLIELKKSIAVVPGMFL PRPTTTTTATTTMTSEQQTEMPTTDDSSERHGGIARRRRKNYRNQQHNSQRQVVVKQQWTRKGNATSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	1.4	0.8967
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	2.2	0.8848
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	3.2	0.8946
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	5.5	0.8620
AT2G17787			unknown protein		Lus10017274 [exp]	7.9	0.8886
AT5G41560			unknown protein		Lus10017523 [exp]	9.4	0.8284
AT3G52230			unknown protein		Lus10037916 [exp]	9.6	0.8514
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	10.4	0.8845
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	10.6	0.8818
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	11.7	0.8816

Compare expression of checked genes

Lus10009773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.