Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03115 127 / 7e-35 Mitochondrial substrate carrier family protein (.1) AT1G14140 41 / 0.0004 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024769 [exp] 191 / 1e-59 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135530 [exp] 142 / 8e-41 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10009777 pacid=23175341 polypeptide=Lus10009777 locus=Lus10009777.g ID=Lus10009777.BGIv1.0 annot-version=v1.0 ATGGATGGCCGTTCCGACTCGTCAAATCCATTGCTTTCAGATAAGCAAAATCAAGTCAACGAGAAGCTGCAATCAGCCATCTCGCCTTCCCATTTGATCA TCAACCATTTCGGCAGCAGCGGAGCATCGGTTGCTGTAGCCACGGCATGCACCCATCCCTTAGATGTGCTTAAAGTTCGGCTGCAGATGCAACTTGTTGG TCAGACAGGTCCTCTGAATGGAATGGTAGGTCTTTATGAGCCATCAAAGTATGCTTGTTACATGGCTTTTGGATCCACCAATATCTTTGTCAAGATTGCC TCAGGAGCTTTTTCTGGTGCACTTGCAACTGCACTCACTAACCCTACTGAAGTCTTTAAGGTATTCATTTGCCATTCCAGACAAAACCTGGCCACTAATT TCATGCTTCAATCAATGCCTACTTCTACCAACTCTCATACTAGTTTCTTGGCAGGTTCGTCTGCAGATGAATACGAATCAGGGGCATGGTGGAACATTGG GAGAGATCCGAAAAATTGTTTCCGAAGAGGGAGTGAGAGCTCTTTGGAAGGGCGTTGGTCCTGGATGACTCGAGCTGCTGCTCTCACAGCTTCACAGTTA GCAACATATGATGAAACCAAGCGGGTTGTGCATACAGAAGGGATTCGTGGGCTTCATAAAGGGGGCCTTACTGTGTTTGCAAGATTGGGTCCTCAAACTA CAATCACATTCATTTTGTGTGAGAAGCTACGACAACTAGCTGGGCTGTGGATGCAATCTAGTGCTCAATTTTGTTCATAA
AA sequence Show only first row Show all	>Lus10009777 pacid=23175341 polypeptide=Lus10009777 locus=Lus10009777.g ID=Lus10009777.BGIv1.0 annot-version=v1.0 MDGRSDSSNPLLSDKQNQVNEKLQSAISPSHLIINHFGSSGASVAVATACTHPLDVLKVRLQMQLVGQTGPLNGMVGLYEPSKYACYMAFGSTNIFVKIA SGAFSGALATALTNPTEVFKVFICHSRQNLATNFMLQSMPTSTNSHTSFLAGSSADEYESGAWWNIGRDPKNCFRRGSESSLEGRWSWMTRAAALTASQL ATYDETKRVVHTEGIRGLHKGGLTVFARLGPQTTITFILCEKLRQLAGLWMQSSAQFCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	0	1
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	1.0	0.9276
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	2.8	0.8914
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	4.9	0.8721
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	5.5	0.8771
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	6.2	0.8542
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	7.1	0.8472
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	7.1	0.8619
AT2G45990			unknown protein		Lus10036369 [exp]	7.3	0.8790
					Lus10041093 [exp]	7.5	0.8714
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	7.7	0.8582

Compare expression of checked genes

Lus10009777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.