Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03100 442 / 1e-153 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT2G46710 387 / 2e-131 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G22400 374 / 2e-126 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 360 / 4e-121 rac GTPase activating protein (.1) AT1G08340 336 / 2e-113 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024768 [exp] 625 / 0 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 380 / 2e-128 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 379 / 3e-128 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 369 / 4e-124 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 368 / 9e-124 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 284 / 6e-92 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 219 / 2e-66 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135570 [exp] 489 / 2e-171 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 387 / 6e-131 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 375 / 2e-126 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 373 / 1e-125 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 372 / 3e-125 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 369 / 8e-124 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 360 / 6e-121 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009778 pacid=23175357 polypeptide=Lus10009778 locus=Lus10009778.g ID=Lus10009778.BGIv1.0 annot-version=v1.0 ATGACGGGGCTGGTAATGCTGACCAAGGGGGGTGGTTGCGGCGGCGTGGGTGACGGTGGTTGTAAAGGCTCGGCAGCAAGGGGCAGCAAAGTAAGCCGCG AGGAGGAGGAAGAGCGCAACCAGCAGCTCTCTACTGTGGCTGTTCTACTGGCCGCTATAAGAAAATCTCTTGCTTCCTCATGCCGGATTGAGGATGGCGA AGACTTGATATCGTCATCTTCCTCCGCCACCAGCGCCGCCTTGCGTCACATGGCCGTGCGTCGCATGGATATCGGCTGGCCGACGAACGTACAGCACATT ACCCATGTCACCTTTGATCGATTCAACGGGTTTCTGGGTCTTCCTGTTGAGTTCGAGGTTGAGATTCCATCTCGAGTTCCTAGCGCCAGTGCTAGTGTGT TTGGGGTGTCAGCAGAATCAATGCAGTGCTGCTACGACAACAAGGGAAATAGCGTACCGACAATTCTTCTACTAATGCAGCAGAAATTATATACACAAGA TGGGCTCAAGGCAGAAGGAATATTCCGCATAAACCCAGAGAATGGGCAAGAAGAAGATGTAAGGGATCAGCTGAACAGGGGAATGGTGCCAGATGATATT GATGTTCATTGTTTAGCAGGGCTTATAAAAGCTTGGTTCAGGGAACTTCCAAGTGGGGTGTTGGATGGCCTTTCCCCTGAACATGTTCTCCAGTGCAACA CTGAAGAGGAGTGTGTTGAATTGGTGAAGCAATTAAAGCCCACCGATGCTGCACTCCTCAATTGGGCGGTTGATCTAATGACAGATGTTGTTCTTGAAGA AGAACACAACAAGATGAATGCTAGAAATATTGCAATGGTCTTTGCTCCAAACATGACTCAGATGTCTGACCCATTGACGGCCCTGATGCATGCTGTGCAA GTCATGAACTTACTCAAAACCTTGATCACAAAGAATCTTCGAGAGCGTGAAGAGATGAGCAGTGAAGGATATTCACCCATGTCTGATGATGAAAACGACG ACCAAGATTGTGACAGCCAGCAGGACATTGAACGAAGAAGACAGGGGTCATCTGATTATGACTATGATGAACACTACAATCCTGACAGTGAAGACGAGGA ACACGAGGTTGAGTCATTAGTTGAAATAGAACAATTGTTTTTGAACGCATTGGATGCAAGTATGGACACTAGCAATGGACCACCTTCAGATGGATTATCT GGAGGAGAGAGCTTCAGCAAGAGACACTCTGAAATGAAGCCTGGGGATGAAGACAGAAGCTTATCCAAAATATGCAAGTGTGGGGGTGATGTGCATATGG AGGTCACTTCATATTCCCCGAGGCTATAA
AA sequence Show only first row Show all	>Lus10009778 pacid=23175357 polypeptide=Lus10009778 locus=Lus10009778.g ID=Lus10009778.BGIv1.0 annot-version=v1.0 MTGLVMLTKGGGCGGVGDGGCKGSAARGSKVSREEEEERNQQLSTVAVLLAAIRKSLASSCRIEDGEDLISSSSSATSAALRHMAVRRMDIGWPTNVQHI THVTFDRFNGFLGLPVEFEVEIPSRVPSASASVFGVSAESMQCCYDNKGNSVPTILLLMQQKLYTQDGLKAEGIFRINPENGQEEDVRDQLNRGMVPDDI DVHCLAGLIKAWFRELPSGVLDGLSPEHVLQCNTEEECVELVKQLKPTDAALLNWAVDLMTDVVLEEEHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQ VMNLLKTLITKNLREREEMSSEGYSPMSDDENDDQDCDSQQDIERRRQGSSDYDYDEHYNPDSEDEEHEVESLVEIEQLFLNALDASMDTSNGPPSDGLS GGESFSKRHSEMKPGDEDRSLSKICKCGGDVHMEVTSYSPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	0	1
AT2G25270			unknown protein		Lus10001945 [exp]	6.1	0.8778
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	6.7	0.8362
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	7.7	0.8588
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	9.5	0.8244
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	18.1	0.8269
AT5G26940		DPD1	defective in pollen organelle ...		Lus10015216 [exp]	18.3	0.8043
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	18.7	0.7717
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	21.6	0.8088
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	22.6	0.8114
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	23.4	0.8549

Compare expression of checked genes

Lus10009778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.