Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60450 234 / 8e-78 Phosphoglycerate mutase family protein (.1) AT3G60440 230 / 6e-76 Phosphoglycerate mutase family protein (.1) AT3G60420 228 / 3e-75 Phosphoglycerate mutase family protein (.1.2.3) AT3G50520 42 / 0.0002 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024765 [exp] 388 / 1e-138 AT3G60450 270 / 2e-91 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141000 [exp] 284 / 2e-97 AT3G60450 338 / 9e-118 Phosphoglycerate mutase family protein (.1) Potri.014G054800 [exp] 279 / 1e-94 AT3G60450 326 / 3e-112 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10009779 pacid=23175353 polypeptide=Lus10009779 locus=Lus10009779.g ID=Lus10009779.BGIv1.0 annot-version=v1.0 ATGGAATCTTCTTCCCTGGCGACGAACAGTGACCGCCAGCAGTACCAGAACGTCGTCGTAATGCGACACGGAGACCGGATGGATAATTTCGATCAGAACT GGACCAAGACCGCCGCTAGGCCCTGGGACCCACCCCTCGTTGATGCTGGCCTCGCCAGGGCATTGGACACCGGGCGTAAGCTCCGGACTGATCTCAGTTT CCCGATCCACCGCGTCTTCGTCTCTCCTTTCCTCCGCTGCATCCAGACCGCCGCCCAAGCTGTGACGGCTCTATGCGCCGTTGACGATTATCCCAAAGTC AAGGTTGCTATTGAGTTTGGATTGTGCGAGATGTTGAATTTGGAAGCTATTAGGAAAGACTGTGTTCCTCAAAACGGAGATTTCGGATTCAATATCCCTG AGCTGGAGGCACTGTTACCAGCTGGGACAGTGGATCACACCGTTAAACGGGTATATGAAGAGATGCCTCAATGGGGAGAGTCAGCAATGGCTGCGAGGAC AAGATACACAGAAATCATCAAGGCCCTTGCTGATAGATACCCTAATGAAAACTTGCTGCTTGTGTCACATGGCGAGTCTCAATCTTCCATCTCTTTGATT TTGTTGTTCATCCACAAGCAGTTAGTTAGTTTACCGGATATATGA
AA sequence Show only first row Show all	>Lus10009779 pacid=23175353 polypeptide=Lus10009779 locus=Lus10009779.g ID=Lus10009779.BGIv1.0 annot-version=v1.0 MESSSLATNSDRQQYQNVVVMRHGDRMDNFDQNWTKTAARPWDPPLVDAGLARALDTGRKLRTDLSFPIHRVFVSPFLRCIQTAAQAVTALCAVDDYPKV KVAIEFGLCEMLNLEAIRKDCVPQNGDFGFNIPELEALLPAGTVDHTVKRVYEEMPQWGESAMAARTRYTEIIKALADRYPNENLLLVSHGESQSSISLI LLFIHKQLVSLPDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	1.0	0.8904
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	2.8	0.8715
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	3.0	0.8352
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	5.2	0.8693
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	7.4	0.8475
AT4G33780			unknown protein		Lus10035665 [exp]	7.5	0.8589
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	7.7	0.8469
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	7.9	0.8413
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	10.2	0.8090
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	10.5	0.8160

Compare expression of checked genes

Lus10009779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.