Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03445 784 / 0 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT4G03080 663 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT2G27210 543 / 7e-180 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 539 / 6e-178 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT5G59160 249 / 5e-76 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 246 / 1e-74 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 236 / 8e-71 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 231 / 6e-69 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G27840 229 / 2e-68 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT1G64040 226 / 2e-67 TOPP3 type one serine/threonine protein phosphatase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024773 [exp] 1006 / 0 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004100 [exp] 541 / 4e-179 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 540 / 3e-178 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 538 / 8e-178 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10024772 [exp] 459 / 1e-157 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10016489 [exp] 240 / 2e-72 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040259 [exp] 240 / 2e-72 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 239 / 6e-72 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 237 / 2e-71 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213300 [exp] 1084 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.014G135800 [exp] 745 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G215700 [exp] 544 / 6e-180 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 538 / 1e-177 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.001G245700 [exp] 244 / 6e-74 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 241 / 7e-73 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 239 / 4e-72 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 238 / 1e-71 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 238 / 2e-71 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 236 / 5e-71 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10009783 pacid=23175355 polypeptide=Lus10009783 locus=Lus10009783.g ID=Lus10009783.BGIv1.0 annot-version=v1.0 ATGGGTTCCAAGCCCTGGTTGTACCCTGCTCCTGCCTATCGCTCCCTGGAAACCTACTGGGATACCGACGATGACGCCCCTGGTCCACGATGCGGTCACA CATTGACCTCCGTCGCCGCATCCAAGACTCATGGTCCTCGTCTCATCCTCTTTGGCGGTGCTACAGCCATCGAAGGCGGCGCTTCCTCCTCCGCCCCTGG CATCAGATTAGCTGGAGTCACCAATTCTGTTCATTCTTACGATGTTCTTACTAGAAAATGGACTAGAATTCGACCTGCCGGAGATCCCCCTTCCCCTAGA GCCGCCCACGCTGCCGCCGCTGTTGGTACTATGGTTGTTTTTCAGGGCGGCATTGGCCCTGCCGGCCATTCTACTGATGATCTCTATGTACTTGACTTGA CCAATGACAAGTATAAATGGCATCGAGTCGTTGTACAAGGGCAGGGACCGGGGCCTCGCTATGGCCATGCCATGGATTTGGTCGGCCAAAGATATCTAGT TACCGTCAGTGGCAATGATGGCAAGAGAGTTCTATCTGATGCATGGACTTTGGATACTGCACAGAAGCCATATGCATGGCAGAGACTGAATCCTGAAGGT GATAAGCCTTCAGCTAGAATGTATGCAACAGCAAGTGCTCGTTCAGATGGCATGTTTTTGCTTTGTGGTGGTCGGGACAGCTCTGGTGTGCCTCTTGGAG ATGCTTATGGACTTCTAATGCATAGAAATGGTCAGTGGGAATGGACTCTTGCCCCTGGAGTGTCTCCTTCACCTAGGTATCAACATGCTGCAGTTTTTGT TGGTGCTCGTTTGCATGTAACCGGAGGCGTTTTGAGAGGAGGACGAGGGGTAGAAGGTGAAGCAGCTATTGCAGTCTTGGACACTGCTGCTGGTGTGTGG CTGGACAGGAATGGGCTAGTAACATCATCTAAAACTGGGAGAGGATTGGCTGACTATGATCCTTCTTTGGAGCTAATGCGTCGTTGTCGGCATGCATCTG CTTCCGTTGGAGTCCGTATATATGTCTATGGTGGTTTGAAAGGAGATGTACTTCTGGATGACTTTTTAGTTGCAGAAAACTCTGCACTTCAGGCTGACGG CAGTTCTCCTATATTAACATCTGAGAAGGCTTCCCCTGTAACTAGTCCTAGATTAAATCACAGTGGGTTAGATTCTTTTGGCGAAGCAGAGAGCCCTCCA TTTGGTAGCATCAGTATGGATAAAATCTCAATGGAGAAATTGAGGGAGGCTTCTGCAGCTGAAGCGGAAGCTGCTAGTGCTGTCTGGCAAGCTGCTCAGG CATCTGTCAATTCCACTGAGGTTACGTCTGTGTCTGATGACAACTCACAGGCAGCTGAGGCAACTACAGATGGTAGTGATGTAGAGGCGGATGTTCGCCT TCATCCGAGAGCTGTTATATCTACATTACTGAGGCCTCGGAACTGGAAACCTCCAACAAATAGGAGGTTTTTTCTGGATTCGTATGAAATTGGTGAACTT TGTTACGCCGCTGAGCAGATATTTATGCATGAACCTACAGTTCTTCAGTTGAAAGCTCCTGTTAAGGTGTTTGGCGATCTCCATGGCCAATTTGGTGATT TGATGCGCCTCTTTGATGAATATGGATTTCCCTCCACAGCAGGAGACATCACTTCATTTGTCACTCATGTTGTAAATAAATTCTCGACTTCTGAATTGTT GTTTGAAAAATCTGTTCTCATGCTCTCTCAGATTGAGTATCCCGAAAATGTTCACCTGATACGAGGAAACCATGAAGCTGCTGATATTAATGCACTCTTT GGTTTTCGCATTGAATGCATTGAGAGAATGGGAGAGAGTGATGGGATATGGGCATGGACACGCTTCAATCAGCTCTTCAACTATCTTCCACTTGCAGCAC TTATTGAAAAGAAAATAATATGTATGCATGGGGGAATCGGCAGATCTATTACTTCAGTGGAACAGATTGAAAAACTCGAGAGACCCATAACCATGGATGC AGGTTCCATAATACTGATGGATCTTCTGTGGTCTGATCCTACAGAAAATGATAGTGTGGAAGGTTTAAGGCCAAATGCGAGAGGCCCTGGTCTTGTCACT TTCGGGCCTGATCGTGTAACAGATTTTTGTAAGAAGAACAAGTTGCAGCTGATTATTCGAGCACATGAATGTGTTATGGATGGGTTTGAACGGTTTGCTC AAGGACAGCTGATTACGTTATTTTCTGCTACGAATTACTGCGGGACTGCAAACAACGCGGGGGCCATATTAGTCGTTGGACGGGGGTTGGTTGTGGTACC AAAGTTGATCCATCCATTGCCGCCACCTCTTCAATCACCGGAAACATCTCCGGAGCGTATTACAGATGAGACATGGATGCAAGAGCTTAACATCCAGAGA CCACCAACTCCGACTCGGGGTCGCCCACAACCTGACCTTGACAGAAACTCACTTGCTTACATATGA
AA sequence Show only first row Show all	>Lus10009783 pacid=23175355 polypeptide=Lus10009783 locus=Lus10009783.g ID=Lus10009783.BGIv1.0 annot-version=v1.0 MGSKPWLYPAPAYRSLETYWDTDDDAPGPRCGHTLTSVAASKTHGPRLILFGGATAIEGGASSSAPGIRLAGVTNSVHSYDVLTRKWTRIRPAGDPPSPR AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHAMDLVGQRYLVTVSGNDGKRVLSDAWTLDTAQKPYAWQRLNPEG DKPSARMYATASARSDGMFLLCGGRDSSGVPLGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRGVEGEAAIAVLDTAAGVW LDRNGLVTSSKTGRGLADYDPSLELMRRCRHASASVGVRIYVYGGLKGDVLLDDFLVAENSALQADGSSPILTSEKASPVTSPRLNHSGLDSFGEAESPP FGSISMDKISMEKLREASAAEAEAASAVWQAAQASVNSTEVTSVSDDNSQAAEATTDGSDVEADVRLHPRAVISTLLRPRNWKPPTNRRFFLDSYEIGEL CYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITSFVTHVVNKFSTSELLFEKSVLMLSQIEYPENVHLIRGNHEAADINALF GFRIECIERMGESDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSITSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVT FGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERITDETWMQELNIQR PPTPTRGRPQPDLDRNSLAYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	0	1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	4.1	0.9172
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10033961 [exp]	9.5	0.9067
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	9.8	0.8939
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	13.7	0.8670
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	14.1	0.9075
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	14.1	0.9112
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	22.5	0.8949
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	22.7	0.9100
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	24.0	0.8983
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	24.0	0.9050

Compare expression of checked genes

Lus10009783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.