Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 340 / 2e-98 PHD finger family protein (.1.2) AT2G31650 79 / 1e-14 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 73 / 9e-13 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT3G14740 57 / 5e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G53430 55 / 3e-07 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 53 / 1e-06 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 48 / 4e-05 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024778 [exp] 904 / 0 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2) Lus10024777 [exp] 431 / 6e-139 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10026725 [exp] 73 / 9e-13 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 72 / 3e-12 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 45 / 0.0003 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 44 / 0.0008 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10038142 [exp] 43 / 0.001 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089400 [exp] 789 / 0 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.005G171800 [exp] 746 / 0 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.014G146300 [exp] 78 / 3e-14 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 77 / 7e-14 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 56 / 2e-07 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 54 / 9e-07 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 52 / 2e-06 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 52 / 2e-06 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.011G103100 [exp] 48 / 3e-05 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.001G382500 [exp] 44 / 0.0007 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009785 pacid=23175359 polypeptide=Lus10009785 locus=Lus10009785.g ID=Lus10009785.BGIv1.0 annot-version=v1.0 ATGATGGGCAGGGGTCCCGGTGGAGGTTGCGGTACCGGCGAGATGCCTTGCCGCCCCAGTTGTAGAGTTATGGCGTTAAATTCCCAGGCCACTGAACCCG AGGTGCCAACCAGCGTGATAACGGGTACAAATTGTCCACGGGGCGTTGATTTCTTCTCTCAGGCACGTAAAGCGTTGTGCGAGCGGTCTCCATTTGATGC TCCTGAAGATGTCCCTGGGACTTCTGTTTCAGCTAGCTCGTGTTTGACTACTTTGCCTAGTGGATTGGCCAGTTTGTTGAGGAATTCTGAAAGCAGAAAA AGACGTGATATACATGAGCCTTGGTTATGTACTAAATGTAAGAAGAACACAGAAGATAAAGATTCAGTAAAGCGACCATGTCTTCTTTGCCCAAAAATGG GAGGTGCCTCTAAACCAGTTGGTAATAGTAGTGACACTTCTGAAGCAGAGTTTGTGCACTTGTTTTGTTCTGTTTGGATGCCTGAGGCCTATGTGGAGGA CCTGACCAAGATGGAGCCGATCATGAATCTTTCTGCTATCAAGGATATACATAAGAAATTAGTATGTAAGGTGTGCAAGGTGAAATGTGGCACTTGTGTT AGGTGCAGTCATGGAACTTGTAGAGCTGCTTTCCATCCCAGATGTGCAAGGGAGGCAAACCACAGGTTGGAGGTCTGGGGGAAGTATGGACATGATAGTG TTGAATTGCGTGCCTTTTGCTCAAAGCACTCGGGACTTCTTGGTGTGAAAGATAGTTTTGAAGTGGGAGAACATTCGTTGACTGTAAAATGTATTTCTAC TGAAAATCTGGCAGAACAGACCCCAGATAAGCATCAAAGCATTCATCGTAATGGAGATAAATGTTCGCCTCTTATAGGAAGTGTTTGTTTGACTTCTACT GATAAATCTAGTGACCTTGAGCAAGGTGACCTCACGTCTTCTGATTCCAGAGATGGGGATGCATTCCAGAGGTGTCACCCGATTGTGGTTGAAAAAAATG ATATTGAGGATCCTACATCATCAAGCTCGTTAAATCTTGAACTTTTGATGAAAAAGTTAGTGCATCGTGGAAAAATCAATGTGACAGATGTGTCAAAAGA GCTGGGAATCTCTCCTGATTCTCTAGATGCAATTTTTACGGAAGACAGATTGGTCCCTGAAGTCCGGTGTAAAATAGTCAGATGGTTTCATAATCATGCT TATATGGCTTCTTCTCAAAAGAACGTAAAAGCTAAGCTGAAGTCTGCAATGTTATCAAACTCTGAGGCAAAGAGTGTTGATTTGTCTGAAGTAATAACAG GATCACCACCTGACTTGACAGACACCTTAGCTGCAAAGTTAGTACCTCAGCAGAGAAAAACCAAAAACAACATTAAGTTTTGCAAGAATGCCAAACCAAT TGGCTTATCCGAAGGCATGTTGGCTGACTATGGGATAGGGATTGACATTAAAGGCGATCAGATGGTCAATGAAGAACTAGAAGACACCATGGGAGGTTTT TGTGAGCGTTATTCTTTCAAAAAGTTCCAGTTAAAAGATGTTTCTGTTTCTATCCAGAATGAAAGTCCTCTGTATTCAGATATTGATGCACTTCTCTCTG ATCTGATGAAAATGGATACATCTTCAATCAATTTTATTCACCCTTCTATCCGTCAAAAGCTGCTGCAGGTGCATGACAGAATGCTTTTCAACAGTACTTC TCATGAGTGTGAAGGAATTGAGGAGATAGAAATGTCCCGTTTGGAGGCTTCATCAGGCGCAACCGTTTGCTGTAATCATGAGAGCAAAGATTTAGAGTGC AATAACAGAGTTTATAATCCTGACGGAGACATTTCTGACAAGCAACTCCAGTCCGATGAGCTAGGAATTTTTCTGATGTCTCCAGCTGATGAAGTAGAAG GAGAAATAATATATTTTCAGCACAAGCTGCTCAGTAATGCAGTTCAAAGAAAGCACTTCACTGGAAATCTTGTTTGCAATCTTTCTGCAAGTTTACCTGC TGAGATTGATGCCGCAAGGAAGAAAAATTGGGAAGCTGTCCTGGTTAATCAGTACATTTGTAAACAGAGGGAAGCTAAGAAATTGGGAAGGAAAGAGAAG AGGCACAAGGAAGCTCAAGCTATACTAGTTGCTGCAACTGCTGCTGCTGCCGCCTCATCTAGAAATTCATTCGCACGAAAAGATGAGCTTGGAAAAGATG CTTTTGATGAATGCACACTTAATGAGCTTAATGTTTCATATGGGAGACCTGGTGTTTCATCCCAGTCGATTCCCCGTCCAAAAGAACCCCTATCGAGGGT AGCACTTCCAAGGATCTCATCACAGAAGTACTCTGATGCTCTTCAGTCAGCTCTCGAGATTTCAAAAGAGCATCCTAGATCATGTGATATTTGCAGGCGG TCGGAGACAGTATTGAACCCTATTTTTGTCTGTTCCAGTTTTCATCTTCACTGTTACCGGAATGTCAAAGAATCTCCAGGGCCATGGCATTGTGAATTAT GTGAAGACTTGTTATCATCCAAGCATTCTGGAGGCCATTCTCTGAACTTCTGGGAAAAGCCTCATTTTGTTGCTGAATGTGGTTTATGTGGTGGTGATAC TGGTGCTTTCCGAAAATGCATCAATGGTCAATGGGTCCATGCCTTCTGTGCTGAGTGGTTGTTTCAGTCGATGTTCAGAAGGGGTCAAGTTAGTTCTGTT GAAGGAATGGAAGAGCTTTTAAAAGCGGCTGATGTCTGCTGTGTTTGCCATCGTAAGCATGGTGCTTGTTTACGGTGTAGCTACGGGCATTGTCAGACTG CATTTCATCCTACTTGTGCAAGAACTGCAGGTTTTTATATGAATGCCAAGTTTCTCAGTGGCAAGTTTCAGCACAAGGCTTACTGTGAGAAACATAGTTT GGAGCCGAAGTTGAAGGTTGAATCACAGAAACATAGCATTGACGAGTTGAAGAGCATCAAACAAATCAGGGTAGAATTGGAGAGGTTGCGCCTTCTATGT GAAAGAGTCATCAAACGTGAAAAGCTAAAGATGGTGCTCGACGCTCCTAAGCACCTAACTTTGACTTTCCTAACTAAGAAGACGACCCATGATCAAGAGG CGGCAAAGGAGGAGGTAGTGGCTTCCAAGAAATTGACCCCTGATCAAGAGGCAGCATATCATGAGGCTGGCTGTAGATTTGGAGGCGTTGGCTTCCACAG TACTGCAAGGGAGGAAGAGAATGAAGAGAGCAGATCTCTAGACGATTTGTAA
AA sequence Show only first row Show all	>Lus10009785 pacid=23175359 polypeptide=Lus10009785 locus=Lus10009785.g ID=Lus10009785.BGIv1.0 annot-version=v1.0 MMGRGPGGGCGTGEMPCRPSCRVMALNSQATEPEVPTSVITGTNCPRGVDFFSQARKALCERSPFDAPEDVPGTSVSASSCLTTLPSGLASLLRNSESRK RRDIHEPWLCTKCKKNTEDKDSVKRPCLLCPKMGGASKPVGNSSDTSEAEFVHLFCSVWMPEAYVEDLTKMEPIMNLSAIKDIHKKLVCKVCKVKCGTCV RCSHGTCRAAFHPRCAREANHRLEVWGKYGHDSVELRAFCSKHSGLLGVKDSFEVGEHSLTVKCISTENLAEQTPDKHQSIHRNGDKCSPLIGSVCLTST DKSSDLEQGDLTSSDSRDGDAFQRCHPIVVEKNDIEDPTSSSSLNLELLMKKLVHRGKINVTDVSKELGISPDSLDAIFTEDRLVPEVRCKIVRWFHNHA YMASSQKNVKAKLKSAMLSNSEAKSVDLSEVITGSPPDLTDTLAAKLVPQQRKTKNNIKFCKNAKPIGLSEGMLADYGIGIDIKGDQMVNEELEDTMGGF CERYSFKKFQLKDVSVSIQNESPLYSDIDALLSDLMKMDTSSINFIHPSIRQKLLQVHDRMLFNSTSHECEGIEEIEMSRLEASSGATVCCNHESKDLEC NNRVYNPDGDISDKQLQSDELGIFLMSPADEVEGEIIYFQHKLLSNAVQRKHFTGNLVCNLSASLPAEIDAARKKNWEAVLVNQYICKQREAKKLGRKEK RHKEAQAILVAATAAAAASSRNSFARKDELGKDAFDECTLNELNVSYGRPGVSSQSIPRPKEPLSRVALPRISSQKYSDALQSALEISKEHPRSCDICRR SETVLNPIFVCSSFHLHCYRNVKESPGPWHCELCEDLLSSKHSGGHSLNFWEKPHFVAECGLCGGDTGAFRKCINGQWVHAFCAEWLFQSMFRRGQVSSV EGMEELLKAADVCCVCHRKHGACLRCSYGHCQTAFHPTCARTAGFYMNAKFLSGKFQHKAYCEKHSLEPKLKVESQKHSIDELKSIKQIRVELERLRLLC ERVIKREKLKMVLDAPKHLTLTFLTKKTTHDQEAAKEEVVASKKLTPDQEAAYHEAGCRFGGVGFHSTAREEENEESRSLDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	3.5	0.9617
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	3.5	0.9557
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	6.6	0.9581
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	6.9	0.9562
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020233 [exp]	9.2	0.9484
					Lus10005601 [exp]	10.0	0.9316
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	11.3	0.9484
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	11.5	0.9435
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	12.2	0.9495
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	12.6	0.9531

Compare expression of checked genes

Lus10009785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.