Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 134 / 5e-36 PHD finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024778 [exp] 328 / 6e-109 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2) Lus10024779 [exp] 164 / 6e-52 ND 72 / 7e-16
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G171800 [exp] 179 / 2e-51 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.002G089400 [exp] 176 / 2e-50 AT1G77800 939 / 0.0 PHD finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009786 pacid=23175345 polypeptide=Lus10009786 locus=Lus10009786.g ID=Lus10009786.BGIv1.0 annot-version=v1.0 ATGCCCTCTAAAATCAAGAAGGAGAGGAATGGCCAAAACATGCATAAATCCAAGGACACATACATAGAGCTTAGTAGGAATAGTTTTAGGGAACCAAATC CCATTATTGCAATACGGGATTTGGTTATCTGCTCCCATAACATACTTGCTAGCAAAAGGGACCATTGGACTCATTCTGCGCTAGTTCAAAACTTGTTCTT ACATCCTGATGTTAGTTCGGAGTCGGCTACCACATCCCTCAAAGTCGATGCAGATGGTTGTGGATCAGGCAGTGATGCTATCCAGAGATCAGATGAAATC ACACTAGATGGTGATGTCCCTGTGCCGAAGCGGATCAAGGTTGCAGTGTTGACGGATACCACTGAGGAAAAAACAGATGACAGTTCCACATCTGAAAATC CTTTGAATAGTAGACCAGCAGAGAGGCAGCCATTTGCTGGGAAGCAAATTCCTAGAAGATCTGGCCCATCTGGTCGTAGTATGTTGGATGATGAAGACTT GAATTCCAGATCAAGGAAGCGAATGGAAACACTGCAGAAGGAGTTGGTAATGACTTCGGATCAAGCATCCATGAGGAATCAGCAATTACCCAAAGGATAC TTTTACATACCAGTAGATCGTCTTCCAAAAGAGAAGCAAACTGATCCTGGAGAAGCATTGAAAACTGACGGACAGGTTTCATCCAAAGGAAATTAA
AA sequence Show only first row Show all	>Lus10009786 pacid=23175345 polypeptide=Lus10009786 locus=Lus10009786.g ID=Lus10009786.BGIv1.0 annot-version=v1.0 MPSKIKKERNGQNMHKSKDTYIELSRNSFREPNPIIAIRDLVICSHNILASKRDHWTHSALVQNLFLHPDVSSESATTSLKVDADGCGSGSDAIQRSDEI TLDGDVPVPKRIKVAVLTDTTEEKTDDSSTSENPLNSRPAERQPFAGKQIPRRSGPSGRSMLDDEDLNSRSRKRMETLQKELVMTSDQASMRNQQLPKGY FYIPVDRLPKEKQTDPGEALKTDGQVSSKGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	1.0	0.8847
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	6.9	0.8010
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	8.0	0.8341
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	8.4	0.8229
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	8.8	0.8372
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	13.7	0.8205
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	13.7	0.8388
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	14.3	0.8217
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	15.0	0.8194
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	17.4	0.7927

Compare expression of checked genes

Lus10009786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.