Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02150 590 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 248 / 1e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 245 / 7e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 235 / 6e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G27460 223 / 3e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 222 / 5e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 218 / 1e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 212 / 7e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 181 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 156 / 7e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024781 [exp] 1006 / 0 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 266 / 8e-83 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 261 / 2e-80 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 248 / 2e-75 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033698 [exp] 233 / 6e-70 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004173 [exp] 226 / 3e-68 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 224 / 2e-66 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 219 / 2e-64 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 218 / 3e-64 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139400 [exp] 652 / 0 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 635 / 0 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 266 / 2e-82 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G079600 [exp] 261 / 7e-81 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 256 / 6e-79 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 255 / 2e-78 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 248 / 1e-75 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063400 [exp] 244 / 3e-74 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 243 / 4e-74 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 233 / 4e-70 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009787 pacid=23175343 polypeptide=Lus10009787 locus=Lus10009787.g ID=Lus10009787.BGIv1.0 annot-version=v1.0 ATGCTTCTACAGCCATCTCTGCATCACTCGAAGCTTTCGATCTCATCTAGTCTTTGTTACTCCACCAGCTCCCTCCCATGGAGAACTCCCAACTATACCC CTCGCAGCCGGGCTCTTGAGTTTCAAACACTCGCAATCACTTGTTCCATCTCTCACGTTCACAGCTATGGAACTGTTGATTTCGAAAAGAGACCTCTCCT AAACTGGAGTGGGGTGTATAAGCGGATTTCGCGAATGGAGAATCCTGACTTGGGTGCTGGCACCGTGTTGGTTCAGTGCGAGAAAGAAGGCAAGAAGCTC ACTAAGTGGGAGCTCTGCAGGGTCGTCAAGGAATTAAGGAAGTTCAAACGCTTCAAGCAGGCTATTGAGGTTTATGAATGGATGGTTAACGAAGGAGAGA GATACACTATATCTGCTAGTGATGCTGCCATTCAACTGGATCTTGTAGCCAAAGTGCATGGCATTTCTGCTGCTGAAGAATATTTCCACAAGGTTCCAGA TTTTCTCAAGGATAGAAGGATCTATGGTGCTCTGCTCAATTCTTACGCGAAGCATAAAAATAAAGAAAAGGCAGAATCACTGTTTGCCGAAATGCGAGGC TATAATTATGCAACGCATACACTTCCGTTCAATGTAATGATGACCCTTTACATGAATCTCAAGGAGTACGCCATGGTGGACAAATTGATTTTTGAAATGT CGAAGAAGAACATCCAACTTGATTTATACTCTTACAACATATGGTTGTCATCTCGTGGGTGTGAAGGTAATATAGAGAAGATGGAGCAGGCATTCGAGCA AATGAAAGTTGACAAGAACGTGACTGCTAACTGGACAACGTACAGCACTTTGGCAACACTTTACATTAAGATGGGACTGAATGACAAGGCTGAAGATTGC TTGAGAATAGTTGAGAAAAGAATCACAGGTCGTGATAGGATGCCTTACCACTATCTCTTGAGTTTATATGGTAATGTTGGTAACAAAGAAGCACTTGTCC GGGTGTGGGAAACTTACAAATCCAATTTTTCCATAGTCCCTAATCTTGGCTACCATGCTTTCATCTCATCTCTTATCCGTTTGGGCGACATTGAAACCGC AGTGAATCTTTATGATGAGTGGATGCAAATTAAGACATCTTACGACCCAAGAATTGCAAATCTGCTAATGGGATGGTTTGCTAGGGAGGGAGACTTTGAC AGATTAGAGAGCTTGTTTAATGATATTATGGACGCAGGAGCTAAGCCAAATTCCAGTACTTGGGAAATTCTGGCAGAGGGCCATGTGGGAGAGGAGAGAA TTTTAGAGGCATTGTCTTGCTTGAAGAAAGCTGTTCTTGGAATGGGTCCAGTGAAGAGATGGAAGCCAAGAGCTGAAGTTGTTTCTTCCTTCTTCAAGCT GTGCGAGGAGGAAGGGGACCTTAGAAGCAAGGAGGTATTGGAGAGTTTGTTTAGAGAATCAGGATTCCTTGCAGACAAAGAATATGCGCCTCTTATTGGT TTGTCCTACATTAATGATCAAGAAGACACAGACACCAGCGGGAATGTGAATTTGGATGCTGATGAGTCGTCAGAGCTGCTTCTAAACCAATTGAATGCTG GTGTTTGA
AA sequence Show only first row Show all	>Lus10009787 pacid=23175343 polypeptide=Lus10009787 locus=Lus10009787.g ID=Lus10009787.BGIv1.0 annot-version=v1.0 MLLQPSLHHSKLSISSSLCYSTSSLPWRTPNYTPRSRALEFQTLAITCSISHVHSYGTVDFEKRPLLNWSGVYKRISRMENPDLGAGTVLVQCEKEGKKL TKWELCRVVKELRKFKRFKQAIEVYEWMVNEGERYTISASDAAIQLDLVAKVHGISAAEEYFHKVPDFLKDRRIYGALLNSYAKHKNKEKAESLFAEMRG YNYATHTLPFNVMMTLYMNLKEYAMVDKLIFEMSKKNIQLDLYSYNIWLSSRGCEGNIEKMEQAFEQMKVDKNVTANWTTYSTLATLYIKMGLNDKAEDC LRIVEKRITGRDRMPYHYLLSLYGNVGNKEALVRVWETYKSNFSIVPNLGYHAFISSLIRLGDIETAVNLYDEWMQIKTSYDPRIANLLMGWFAREGDFD RLESLFNDIMDAGAKPNSSTWEILAEGHVGEERILEALSCLKKAVLGMGPVKRWKPRAEVVSSFFKLCEEEGDLRSKEVLESLFRESGFLADKEYAPLIG LSYINDQEDTDTSGNVNLDADESSELLLNQLNAGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	0	1
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	1.0	0.9819
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	1.4	0.9608
AT1G62780			unknown protein		Lus10024592 [exp]	3.7	0.9518
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	4.0	0.9551
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	4.9	0.9569
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	5.2	0.9503
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	5.7	0.9473
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	6.3	0.9516
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	6.9	0.9545
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	8.5	0.9441

Compare expression of checked genes

Lus10009787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.