Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49130 533 / 0 MATE efflux family protein (.1) AT1G71870 377 / 3e-126 MATE efflux family protein (.1) AT4G29140 360 / 3e-119 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G52050 353 / 1e-116 MATE efflux family protein (.1) AT5G19700 345 / 1e-113 MATE efflux family protein (.1) AT1G58340 327 / 2e-106 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 318 / 2e-103 MATE efflux family protein (.1) AT2G38510 303 / 1e-97 MATE efflux family protein (.1) AT4G22790 201 / 2e-58 MATE efflux family protein (.1) AT5G52450 190 / 2e-54 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007231 [exp] 383 / 1e-127 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 345 / 1e-113 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 337 / 6e-110 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 331 / 9e-108 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 317 / 2e-102 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 270 / 4e-84 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 254 / 2e-79 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 212 / 2e-62 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 199 / 1e-57 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011400 [exp] 623 / 0 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 389 / 8e-131 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 383 / 1e-128 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 359 / 9e-119 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 358 / 5e-118 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 352 / 5e-116 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.003G121400 [exp] 338 / 1e-110 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 325 / 1e-105 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 298 / 5e-95 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 221 / 4e-66 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10009788 pacid=23175350 polypeptide=Lus10009788 locus=Lus10009788.g ID=Lus10009788.BGIv1.0 annot-version=v1.0 ATGGTTGCAGCAGAGAAATCCCACGACTACCCGACAATGCCTGAGGTGGCAGATGAACTCACGAAAATGGCTGGCATAGGTTTCCCCGTAGCTACCATAA GCTTGCTGAGCTACCTGAAAAACATGATCTTAGTTGTGTGCATGGGAAGGCTTGGAAGCCTCGAGTTAGCTGGAGGTGCCTTAGCTATTGGTTTCACCAA CATCACTGGTTACTCACTCCTATCTGGGTTGGCTACTGGGATGGAGCCACTCTGCAGTCAGTCCTTTGGTTCCAGAAACTTATTAGTGGCTTCTCACACT CTTGGAAGAACTGTTCTTATGCTACTTGTAGCTTCCATACCCATTTCCTTGCTATGGATCAACCTGGAGCCAATAATGATAACACTCCATCAAGACGTTC AAGTCATCAGAGTTGCAAGTTTGTACTGCCGATTTTCCATCCCGGATCTCATCGCTAATAGCTTCTTACATCCCATACGTATCTATCTACGAAGCAGAGG AAGTACCTGGCCATTGATGTGGTGCACCTTAATCCCAATTCTTCTACACTTACCTATCGCTATAATCCTAGCATTCACACTAAATCTAGGAGTAGCCGGA CTCGCAATTTCCACCTTCATTACAAACTTCAACGCTATTATGTTGCTCATATGTTACATCTACTTCATGAACAATGATTGTCATCAAGTACTTTTGGTTC AGGGGCCATCTTCACTATTAGGAAATGAGTGGGGTGTCCTACTTCGACTAGCAATCCCAAGTTGCGTGGCAGTTTGTTTAGAGTGGTGGTGGTACGAATT CATGACAATCCAGTCCGGTTATTTAACCGAGCCTCGTGTTGCACTAGCTACATCAGCTATAGTAATCCAGACCACTTCTCTTATGTACACTCTGCCAAGT TCACTAAGCGCCTCTGCCTCTACAAGAGTGGGGAATGAGCTAGGAGCTGGAAGGCCAGAAAAGGCACGGCTAGCTGCTATCGTATCCATAGCTGTAGCAC TAGTAAGTTCGTTATTAGGGTTGTTAGGGACGACGATTGGTCGAGAAGCTTGGGGAAGACTGTTTATAGAGGACAAAGAGGTGCTTGAGTTGACCATAAC TGTACTACCCATAATCGGAGTATGCGAGCTTGCAAACTGTCCACAAACAACAAGTTGTGGGATCTTAAGAGGAAGTGCTAGGCCTTCCATTGGGGCCGCC ATCAACTTCTACTCGTTCTACTTGGTGGGTGCGCCGGTTGCCTTTACATTGGCCTTTGTTTTCAATCTTGGATTTGTGGGTCTTTGCTATGGTCTTCTAG CGGCTCAACTTGCATGTGTTATCTCCATTCTGACAGTAGTTTACAAAACTGATTGGGGAAAAGAGGCATTTAAGGCCAAAAACATGATGCGCAACAGTGA CGTCAGTACATCAGCACATGAACAAGCAAAAGAAGAAACATTTCTTAAATGTGAACAAGGTGTTGGGTTCCACGTTGAAGCATTATAA
AA sequence Show only first row Show all	>Lus10009788 pacid=23175350 polypeptide=Lus10009788 locus=Lus10009788.g ID=Lus10009788.BGIv1.0 annot-version=v1.0 MVAAEKSHDYPTMPEVADELTKMAGIGFPVATISLLSYLKNMILVVCMGRLGSLELAGGALAIGFTNITGYSLLSGLATGMEPLCSQSFGSRNLLVASHT LGRTVLMLLVASIPISLLWINLEPIMITLHQDVQVIRVASLYCRFSIPDLIANSFLHPIRIYLRSRGSTWPLMWCTLIPILLHLPIAIILAFTLNLGVAG LAISTFITNFNAIMLLICYIYFMNNDCHQVLLVQGPSSLLGNEWGVLLRLAIPSCVAVCLEWWWYEFMTIQSGYLTEPRVALATSAIVIQTTSLMYTLPS SLSASASTRVGNELGAGRPEKARLAAIVSIAVALVSSLLGLLGTTIGREAWGRLFIEDKEVLELTITVLPIIGVCELANCPQTTSCGILRGSARPSIGAA INFYSFYLVGAPVAFTLAFVFNLGFVGLCYGLLAAQLACVISILTVVYKTDWGKEAFKAKNMMRNSDVSTSAHEQAKEETFLKCEQGVGFHVEAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	1.0	0.9809
					Lus10026092 [exp]	2.4	0.9292
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	2.4	0.9182
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	2.8	0.9168
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028928 [exp]	4.0	0.8848
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	4.5	0.9049
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10002513 [exp]	4.8	0.8317
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10024035 [exp]	6.0	0.8374
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	6.0	0.8604
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	6.5	0.8950

Compare expression of checked genes

Lus10009788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.