Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21930 423 / 2e-140 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 186 / 4e-51 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT1G63440 170 / 1e-45 HMA5 heavy metal atpase 5 (.1) AT5G44790 155 / 2e-40 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30110 107 / 1e-24 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 104 / 1e-23 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G37270 92 / 2e-19 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT1G07670 73 / 2e-13 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 72 / 3e-13 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT1G80660 72 / 4e-13 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038070 [exp] 568 / 0 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10023777 [exp] 192 / 4e-53 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10031273 [exp] 165 / 7e-44 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10031840 [exp] 164 / 2e-43 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 145 / 5e-37 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 143 / 2e-36 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 130 / 5e-32 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10006955 [exp] 99 / 1e-21 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 99 / 1e-21 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047800 [exp] 484 / 6e-163 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.006G220201 [exp] 203 / 7e-62 AT5G21930 369 / 1e-121 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 202 / 6e-57 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 193 / 9e-54 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G220150 [exp] 173 / 1e-52 AT5G21930 194 / 5e-59 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G019100 [exp] 166 / 3e-44 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 151 / 3e-39 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 150 / 6e-39 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 149 / 2e-38 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 144 / 6e-37 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10009789 pacid=23159588 polypeptide=Lus10009789 locus=Lus10009789.g ID=Lus10009789.BGIv1.0 annot-version=v1.0 ATGCAGGTCATGCTTCTTGGTTTTGTGCTGCTTGGGCGTTCTCTTGAGGAAAGAGCTAGGATTAGGGCATCTAGTGATATGAACGAACTTCTCTCACTAG TATCTACTCAATCGCGACTTGTAGTGACTTTGTCAGATAACAATTCGCCTGCTGATACTGTTCTTGGATCTGATGCCATATGTGCTGAGGTTCCAACGGA TGATGTTCGTGTTGGAGACACAATACTGGTCCTTCCTGGAGAAACAATTCCAGTAGATCTAACATCTAAGTTTACTGGACAGGGGAAAGTAGTCGCAGGC AGAAGTGTGGTAGATGAATCCATGCTGACAGGTGAATCGCTGCCCGTGTTGAAGGAAAAAGGCCTCAAAGTTTCAGCTGGAACAGTAAATTGGGATGGTC CCTTGAGGATTGAGGCCTCATCTACTGGCTCAAACTCTACGATATCAAGGATTGTTAGCATGACAGGGACTCTCACCAAAGGAAAACCATCTGTCTCGGG TGTGGCATCACTTTGTCATGAAGAAGAAGAAATTCTTCAGATTGCTGCTGCGGTGGAGAAGACGGCACAGCACCCAATTGCAAGAGCTATCGTAAATAAG GCAGAATCCCTGAATTTGAACATCTTGGAAACAAGAGGGCAAATAACAGAACCAGGTTATGGAACTTTAGCAGAGGTAGAGGGACGTTTAGTAGCAGTTG GTTCTTTGGATTGGGTCAACAAACGTTTTCATCAAAGGACAGCAGTTACTGATATAGAGAACCTTGAAGCTGCAGTCAGGCATCAATCGTCGAAAGAGAT GCTCAACTCTAACTATTCTAAAACAGTTGTTTATGTCGGACGGGAAGGGGAAGGTATTATTGGTGCTATTGCACTATCCGACTGTCTCCGTCATGATGCT GAGTCTACTGTTAGTAGGCTCCAGCAGAAGGGGATCACAGCAGTCCTTTTATCAGGAGACAGGGAAGAAGCTGTAGCAACAATAGCAAAAACTGTTGGAA TAGAGAGTGAGTTTATCAATGCATCTTTATCTCCGCAGCAGAAATCTGAGGTCATATCAACTCTACAATCTGCCGGACACAATGTTGCAATGGTAGGTGA TGGGATAAATGATGCACCCTCGCTGGCTCTCGCTGATGTTGGAATTGCACTGCAAACTGAAACACAGGAGACTGCTGCGTCTGATGCAGCATCCATTATC CTTCTCGGTAACAAACTCTCACAGGTGGTGGATGCTCTGGATCTGGCACGAGCAACACTGGCCAAAGTTCATCAAAATTTATCTTGGGCAGTTGCTTATA ATGTCATGGCTGTTCCTATCGCTGCTGGAGTGTTACTTCCCCAATACGATTTCGCAATGACGCCTTCACTTTCAGGTGCTTAG
AA sequence Show only first row Show all	>Lus10009789 pacid=23159588 polypeptide=Lus10009789 locus=Lus10009789.g ID=Lus10009789.BGIv1.0 annot-version=v1.0 MQVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVVTLSDNNSPADTVLGSDAICAEVPTDDVRVGDTILVLPGETIPVDLTSKFTGQGKVVAG RSVVDESMLTGESLPVLKEKGLKVSAGTVNWDGPLRIEASSTGSNSTISRIVSMTGTLTKGKPSVSGVASLCHEEEEILQIAAAVEKTAQHPIARAIVNK AESLNLNILETRGQITEPGYGTLAEVEGRLVAVGSLDWVNKRFHQRTAVTDIENLEAAVRHQSSKEMLNSNYSKTVVYVGREGEGIIGAIALSDCLRHDA ESTVSRLQQKGITAVLLSGDREEAVATIAKTVGIESEFINASLSPQQKSEVISTLQSAGHNVAMVGDGINDAPSLALADVGIALQTETQETAASDAASII LLGNKLSQVVDALDLARATLAKVHQNLSWAVAYNVMAVPIAAGVLLPQYDFAMTPSLSGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10009789 [exp]	0	1
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	3.7	0.8695
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	5.7	0.8779
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	8.9	0.7884
AT1G26750			unknown protein		Lus10019740 [exp]	15.9	0.8664
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	19.3	0.8216
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	19.6	0.8286
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	21.4	0.8574
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	21.6	0.8020
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	26.9	0.8138
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	30.4	0.8140

Compare expression of checked genes

Lus10009789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.