Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26330 1400 / 0 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 1075 / 0 ERL1 ERECTA-like 1 (.1.2) AT5G07180 1073 / 0 ERL2 ERECTA-like 2 (.1) AT2G33170 428 / 8e-133 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 427 / 9e-133 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 423 / 4e-132 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 419 / 2e-130 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 418 / 3e-130 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 420 / 5e-130 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 417 / 1e-127 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038071 [exp] 1617 / 0 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031689 [exp] 1061 / 0 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 1056 / 0 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10011761 [exp] 430 / 5e-135 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039030 [exp] 421 / 8e-130 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10039641 [exp] 410 / 8e-127 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 404 / 7e-123 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10000814 [exp] 397 / 3e-122 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 397 / 5e-122 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220100 [exp] 1462 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G132200 [exp] 1096 / 0 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 1094 / 0 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.002G256500 [exp] 425 / 1e-132 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G157300 [exp] 422 / 1e-131 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 424 / 3e-131 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 423 / 5e-131 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 420 / 5e-130 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 423 / 7e-130 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G007600 [exp] 418 / 1e-129 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009790 pacid=23159598 polypeptide=Lus10009790 locus=Lus10009790.g ID=Lus10009790.BGIv1.0 annot-version=v1.0 ATGGCATTTGGAGCAAAGAAAACGATGGCAGTGGCTCTGGTTTTGGGTACTATCCTCTGTTTGATGGTTGGCTCTGTGTTTTCTGACGATGGGGAAACGC TGGTGGAGATAAAGAAGTCATTCAGGGATGTGGACAACGTTCTGTATGATTGGACGGACTCATCTTCTTCTGATTATTGCGTGTGGAGAGGCATCATTTG TGACAATGTCACCTTCAATGTCCTGGCACTCAACCTGTCAGGGTTGAATCTTGAAGGAGAAATCTCACCGGCAATTGGAAATCTCAAAGGCCTCATCTCC ATTGATCTCAGGGAAAATCGACTATCTGGGCAGATACCTGATGAGATTGGTGATTGCTCTTCGTTGAAAAGCCTGGACTTGTCGCTTAATCAGATATATG GAGACATACCATTTTCTATCTCAAAGCTGAAGCAACTTGAATACCTCATTTTGAAGAACAACCAACTGATCGGCCCTATTCCATCAACCCTGTCTCAGAT TCCAAACTTGAAAGTCTTAGACCTGGCCCAGAATAAGCTTAGTGGGGAGATACCGAGGCTTATTTATTGGAATGAAGTTTTGCAGTATCTGGGTTTGCGG GGGAACAATTTGGTTGGCTCACTTTCCACTGATATTTGCCAGCTAACTGGGCTTTGGTATTTTGATGTAAGGAACAACAGTTTGAGCGGCACTATCCCTG AGGATATAGGCAACTGCACTGGCTTCCAAATCTTGGACCTCTCTTATAACCAACTCACTGGAGAGATTCCATTTAACATTGGCTTCTTGCAAGTTGCTAC ATTATCTTTGCAAGGCAATCAGTTAGAAGGGAAGATTCCATCAGTGATCGGTCTGATGCAGGCTCTTACTGTGCTCATGATCTTTCTACATTGTTCACTG CCTTCCATTTTCCTTTCTTGTCGGCACAAACTCAGGGATTTAAGTTGCAACAAGCTGAGTGGGCCTATTCCTGCTATACTTGGTAACTTGAGTTACACTG AGAAACTGTATTTGCATAGTAATAAGCTTTCTGACTCGATCCCCCCAGAACTAGGGAATATGACAAAGCTACACTATTTGGCATTGAATGATAATCAGCT TACAGGACGTATTCCACCGGAGCTGGGGAAGTTAACAGATTTGTTTGATCTAAACGTTGCCAACAATTTGTTAGAAGGACCAATTCCTGATAATCTGAGC TCATGCACAAACCTTAATAGTCTCAATGTGCATGGGAACAAGTTGAATGGATCCATCCCTCGTGCGTTTCAAAAGCTAGAGAGTATGACATATCTAGACC TCTCTAGTAACAACATTAGTGGGTCCATTCCCTCTTCACTTGGTGACTTGGAGCATCTTCTTAAGATGAATTTGAGCAGAAACCAAATTACAGGATCAAT TCCTGGAGAGTTCGGAAACCTAAGAAGTGTAATGGAGATAGACCTTTCGGAGAATCATCTCTCGGGATCAATTCCTCAGGAACTTGCTCAGCTTCAGAAC ATGTTTTCGCTGAAAGTGGAGTACAATAATCTGTCAGGCGATTTATCGTCTCTGGTGAATTGCCTAAGTCTCAACTTCTTAAATGTGTCGTATAACAGCC TTGTTGGCGTTATTCCTACAAACAACAACTTCTCCAGATTTTCACGAAATAGCTTTATTGGAAATCCTGGACTTTGTGGAGACTGGCTCAACTCTCCCTG CCATGACTCACACCCAACTCAAAGAGTTACAATTTCCAAAGCGGCAATACTGGGAATAGCGCTTGGAGCTCTTGTTCTTCTCTTGATGATATTAGTGGCA GCTTTTCGGCCTCAAAATCCTCCACCTTTTCTTGAAGGATCAATTGATAAACCAGTGAGTTATTCGACCCCAAAGTTGGTGATTCTTCACATGAACATGG CCCTCCATGTGTATGAAGATATCATGAGAATGACTGAGAATCTGAGTGAGAAGTATATAATTGGTTATGGTGCATCGAGCACGGTGTACAAGTGTGTCCT CAAGAATTGCAAGCCAATTGCTATCAAGAGACTCTACTCTCACTATCCTCAATGCTTGAAAGAATTCGAAACAGAGCTAGGAACAGTTGGGAGCATCAAA CACCGAAATCTAGTCAGCCTTCAGGGTTATTCACTCTCTTCTTCAGGACACCTCCTTTTCTACGATTACATGGAAAACGGCAGTCTCTGGGATCTGCTTC ATGGCCCTACAAAGAAGAAAAAGCTGGAGTGGAATACTCGTCTGAAGATAGCAATGGGAGCTGCTCAAGGGCTAGCATATCTGCACCACGATTGTAGTCC TCGTATAATTCACAGGGATGTGAAGTCCTCAAACATTCTTCTGGACAAGGATTTTGAAGCACATTTAACTGATTTTGGCATTGCCAAGAGCTTGTGTGTG TCGAAATCCTATACATCCACCTACGTAATGGGCACAATTGGTTATATAGATCCAGAGTACGCAAGAACTTCACGTCTCACGGAGAAGTCTGATGTTTACA GCTACGGGATCGTTCTACTTGAGTTGCTCACTGGAAGGAAAGCCGTTGATAATGAATGCAATCTCCATCATCTGATACTGTCCAAGGCAGCAAACAATGC AGTGATGGAGACTGTTGATGGCGAGATAACTGAAACTTGCAAGGATCTTGGAGCTGTGAAGAAGGTATTCCAGCTGGCACTTTTATGTGCGAAGCGTCAG CCATCAGAGCGACCAACAATGCATGAAGTGACACGAGTGCTGAGTAGCCTGATGCCACCAAGCTCACCGCCAAAGCAATGCACGCAGCTGGACGGGGCAG TGAAAGTTGGAGGGTGCTACATGGATGACTATGCTAATCTCAAGACTCCACATCTTGTGAATTGCCCATCGATGAGCACCTCGGATGCTCAGCTGTTCCT TAAGTTTGGAGAAGTTATATCCCAAAACAGCGAGTGA
AA sequence Show only first row Show all	>Lus10009790 pacid=23159598 polypeptide=Lus10009790 locus=Lus10009790.g ID=Lus10009790.BGIv1.0 annot-version=v1.0 MAFGAKKTMAVALVLGTILCLMVGSVFSDDGETLVEIKKSFRDVDNVLYDWTDSSSSDYCVWRGIICDNVTFNVLALNLSGLNLEGEISPAIGNLKGLIS IDLRENRLSGQIPDEIGDCSSLKSLDLSLNQIYGDIPFSISKLKQLEYLILKNNQLIGPIPSTLSQIPNLKVLDLAQNKLSGEIPRLIYWNEVLQYLGLR GNNLVGSLSTDICQLTGLWYFDVRNNSLSGTIPEDIGNCTGFQILDLSYNQLTGEIPFNIGFLQVATLSLQGNQLEGKIPSVIGLMQALTVLMIFLHCSL PSIFLSCRHKLRDLSCNKLSGPIPAILGNLSYTEKLYLHSNKLSDSIPPELGNMTKLHYLALNDNQLTGRIPPELGKLTDLFDLNVANNLLEGPIPDNLS SCTNLNSLNVHGNKLNGSIPRAFQKLESMTYLDLSSNNISGSIPSSLGDLEHLLKMNLSRNQITGSIPGEFGNLRSVMEIDLSENHLSGSIPQELAQLQN MFSLKVEYNNLSGDLSSLVNCLSLNFLNVSYNSLVGVIPTNNNFSRFSRNSFIGNPGLCGDWLNSPCHDSHPTQRVTISKAAILGIALGALVLLLMILVA AFRPQNPPPFLEGSIDKPVSYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPIAIKRLYSHYPQCLKEFETELGTVGSIK HRNLVSLQGYSLSSSGHLLFYDYMENGSLWDLLHGPTKKKKLEWNTRLKIAMGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV SKSYTSTYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNECNLHHLILSKAANNAVMETVDGEITETCKDLGAVKKVFQLALLCAKRQ PSERPTMHEVTRVLSSLMPPSSPPKQCTQLDGAVKVGGCYMDDYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	0	1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	1.0	0.9783
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	1.7	0.9588
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	2.0	0.9550
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	3.5	0.9604
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	4.5	0.9547
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	5.7	0.9359
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	6.5	0.9535
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	8.5	0.9427
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	8.8	0.9515
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	10.8	0.9321

Compare expression of checked genes

Lus10009790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.