Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33200 2007 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) AT1G54560 1513 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 1498 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 1459 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04160 1418 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 1414 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT5G43900 1400 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT4G28710 1357 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1233 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G08730 1072 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038072 [exp] 2863 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Lus10005521 [exp] 1538 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 1485 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 1467 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 1453 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 1442 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 1241 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1157 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 888 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220000 [exp] 2291 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.001G199200 [exp] 1547 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 1531 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.019G013800 [exp] 1530 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.013G043900 [exp] 1528 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 1470 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.002G254300 [exp] 1460 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 1447 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1397 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G041800 [exp] 919 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0023 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10009791 pacid=23159584 polypeptide=Lus10009791 locus=Lus10009791.g ID=Lus10009791.BGIv1.0 annot-version=v1.0 ATGCTTAATCTGCGTATTGGCTCCAAGGTTTGGGCTGAGGATAAGAATCTCGCTTGGGTTGCTGCTGAAGTCACTGATGTCATCGGCAAGCAACTCCACC TCCTCACTTCCACTGGCAAGAAGGTTGTGGCTTCTTCCGATAAGCTGTTGCCAAGGGATGCCGACGAAGAGGAGGAGCACGGTGGAGTGGACGACATGAC CAAGCTCACCTACTTGAATGAGCCTGGAGTTCTTTACAATCTCGAAAGGAGATATGCCCTCAACGATATTTATACATATACAGGAAGCATTTTGATAGCA GTCAATCCTTTCACCAAGCTTCCACATTTGTACAATGTGCATATGATGGAACAGTATAAAGGAGCTCCATTTGGGGAGCTAAGCCCTCATGTTTTTGCCG TGGCTGATGCATCGTACAGAGCCATGATGAGTGATCGTCGAAGCCAATCTATACTAGTAAGTGGAGAAAGTGGGGCTGGAAAAACAGAGACAACAAAACT TATTATGCAGTACCTCACGTACGTTGGCGGTCGAGCTGCTGGTGATGACCGTACGGTTGAGCAGCAAGTTCTTGAATCAAATCCACTCTTGGAGGCATTT GGTAATGCAAGAACCGTCAGGAATGATAACTCAAGTCGTTTTGGCAAGTTTGTTGAGATCCAGTTTGACAAAAATGGTAGAATATCTGGTGCTGCAATCA GAACATATCTTCTGGAAAGATCCCGTGTAGTTCAAATAACAGATCCTGAGAGGAACTATCACTGTTTCTATCAATTGTGTGCATCTGGCAGGGATGCAGA AAGGTACAATCTAGATCATCCAAGCCATTTCCACTACTTGAATCAAAGCAAGACTTATGAACTAGATGGAGTGAGCAATGCAGAAGAATACATAAGGACA AGACGGGCAATGGATGTTGTTGGTATAAGCCATGATGACCAGGAAGCTATATTTCGTACCTTGGCTGCAATTTTACACCTTGGAAATATTGAATTTTCTC CTGGCAATGAGCATGATTCATCTGTTATAAAGGATAAGAAATCCAATGTCCATATGCAGAGGGCAGCCAATCTTCTCATGTGTGATGTAAATCTTTTGCT GGCAACATTATGTACACGTACGATTCAAACCCGTGAAGGAATTATTATAAAAGCTTTGGACACCAATGCTGCTATTGCTAGCCGTGATGCCTTGGCGAAG ACTGTATATGCAAAACTATTTGATTGGCTTGTTGGTAAGATCAATAGGTCTGTAGGTCAAGATTTGACTTCCCAGATACAAATTGGAGTGCTGGACATAT ATGGATTTGAATGCTTCAAAAACAACAGTTTTGAGCAATTCTGCATTAATTTTGCTAATGAGAAGCTTCAGCAGCATTTTAACGAGCACGTCTTTAAGAT GGAGCAGGAAGAATACAGAAAAGAAGAGATTAATTGGAGCTATATTGAGTTTATAGATAACCAGGACGTATTGGACCTCATTGAAAAGGTTACCTATCAA ACAGACACATTCTTGGAGAAAAACCGTGATTATGTAGTACTGGAGCATTGCAATCTATTATCATCTTCCAAATGTTCCTTCGTTGCTGGACTTTTCTCTT CATCTCCAGAGGAAACTTCTAGATCATCATACAAGTTCTCTTCTGTTGCCACTAGGTTTAAGCAACAACTTCAAGCACTTATGGAAACCCTAAACACAAC TGAACCCCATTACATACGATGTGTGAAGCCAAATTCTTTGAACAGGCCTCAGAAATTTGAAAGTCAGAGTATATTGCATCAGTTACGATGTGGGGGTGTC CTAGAGGCTGTGCGGATAAGTCTTGCGGGATATCCTACACGAAGAACATACTCAGATTTTGTCGATCGTTTTGGGATTCTTACTCCGGAATACCTGGATG GAAGCTGTGATGAAAGAGTTTGGACAGAGAAAATACTGCAGAAGTTGAAGCTTCAAAATTTTCAGTTAGGGAGAACAAAGGTATTCCTGAGAACTGGGCA GATTGGTATTTTGGATGCACGAAGGGCTGAGGTTTTGGACACTGCAGCAAAGTGCATCCAGCGACGGGTACAGACTTTCATTACATGCAGACGTTTCCTT TCAAAGAAAGCAGCTGCAGTTTCATTCCAAGCATACATTAGAGGAAGTATTGCTCGGAAGACATATTCTCAGAAGCGGAGGACAGCTGCTGCTATTACAG TACAGAAATGGGTTCGGAGGTGGCATATGCAGCATGCCTATTTGAAAATGTTTTCAGCTGCAGTAGTTATACAGTCAAGTATTTGTGGTTACTTATCTCG CCAAAGATTCAGAAATGGAAGGAGCAACAAGGCTGCGTCTCTCATTCAGGCTCGGTGGAGGATGTACAGGTTCCGCTCTGCTTTGAGGCACCGTCAAGCT TCCATTGTAGCCATACAATGTCGTTGGAGGCAAAAATTAGCGAAAAGAGAGCTTCGCAAGCTTAAACAAGCGGCTAATGAAACAGGGGCCTTGCGTTTAG CAAAGAGTAAACTTCAGAAGCAGTTGGAAGATCTCACATGGCGGTTGCATTTGGAGAAAAGACTACGGGTTTCTGGTGAAGATGCCAAGTCCGTTGAACT TTCCAAGCTTAAAAAATCATTAGAATCTATGATACTTGAATTAGATGCAGCCAAGTTAGCTACTATTAGTGAATGCAACAGAAATGCAGTATTGCAAAAT CAGTTGGAACTGTCAAAGAAGGAAAAATCATCGTTGGAAAGGGAACTTAATGCGATGGCTGAGCTGAGAAAGGAGAACACTTATTTGAAGGGTTCTGTGG ACATCTTACAAAAGAAGAACTGTGCCTTGGAACTTGGGCTTGTCCAAGCTCAAAAGCATACAAGTGAAACTGTTGGAAAAATGAAGGATCTTGAGGGCAA ATGTTTTCAGCTGCAACAGAATGTTCAGAGCCTGGAGAAGAAGCTTGCCCTGTTGGAGGATGAAAATCATGTCCTCAGACAAAAAGCTTTGAGTACCTCT CCGAAAGGAAACAACTCTAGTCTGGTGAAATCCTTTTCCGATAATCTTATGACGTATTACTTCGTCAACTCTAAACTGGCCCCAAATGGCTTTATGAAAC AGAAATACCCTGGTGCAATTGTTCTAACTTCTGAGAGGAAGCAAAACTTTGAGTCACCAACACCTTCAAAACTTGTACCACCCTTTTCACGTGGGTTGTC TGAATCACGCCGAACTAAGCTTACAGCGGAAAGGTCCCAGGAGAATTATGAATTCTTATCAAGGTGCATCAAAGAAGATTTAGGCTTTATAGAAGGAAAA CCGTTGGCAGCTTGTATAATATACAGATGCCTTCTTCAGTGGCGTTCTTTTGAGACTGAGCGGACAACTATATTTGACTATATCATTGAGGGAATTAATG ATGTCTTAAAGGTAGGGGATGAAAACATCTCTTTACCATATTGGCTGGCCAATGCCTCTGCACTTCTGTGCCTCCTACAGAGGAACCTACAATCAAATGG TTTTTTTACGAAAGGGACTCCACGATCTACATCTGCAGGATTACCCGGAAAGGCTCTGAAGTCTGCTTTCAAGTATATTGGCTTTGATGAGGGTCTTTCA CATGTGGAAGCTAGATATCCAGCGATTCTATTCAAACAGCAGTTAACTGCTTGTGTAGAGAAGATATTTGGTTTGATTAGAGATAATTTGAAGAAGGAAC TATCACCACTTCTCGCATTTTGTATCCAGGCCCCTAAAACTGTACGCAATGCTGGGAAGTCTTCTAGATCACCGTCAGGCGTTCCTCAGCAGTCACCTGG TAGTCAGTGGGAAGGAATCATCAATTTTTTGGATTCGCTCATGGACCGGTTACGTGGCAATCATGTGCCATCGTTTTTCATCCAGAAGCTCATTACTCAG GTGTTCTCTTTCATCAATATACAACTTTTCAACAGTCTTCTGCTACGACGTGAATGTTGTACATTTTCAAACGGGGAGTATGTAAAGTCTGGTCTGGCAG AGCTTGAAAAATGGTTAACTAAGGTGACTCAGGAGTACGCAGGAAATTCGTGGCACGAGCTAAGTTATATCAGACAAGCTGTTGGGTTTTTGGTGATACA TCAGAAGAGGAAAAAGTCCCTAAAAGAGATCATGGAAGAAATGTGTCCAGTGTTGACTGTGAGGCAAATATACCGTATCAGTACCATGTATTGGGATGAT AAATACGGCACTCAGAGCGTATCAAACGAGGTGGTTGCTGAAATGAGAGAGATGTTGAACAAAGACAGCCAGAATCTGACATCCAACTCTTTCCTATTAG ATGACGATCTGAGCATTCCGTTCTCGACAGAGGATATAGACAAGGCGATACCAGGAATCGATCCTTCAGATATTGATCTTCCAAAGTATTTGCTGGAACA TCCATCTGCGCAGTTCCTTAAGCATTAA
AA sequence Show only first row Show all	>Lus10009791 pacid=23159584 polypeptide=Lus10009791 locus=Lus10009791.g ID=Lus10009791.BGIv1.0 annot-version=v1.0 MLNLRIGSKVWAEDKNLAWVAAEVTDVIGKQLHLLTSTGKKVVASSDKLLPRDADEEEEHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIA VNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMMSDRRSQSILVSGESGAGKTETTKLIMQYLTYVGGRAAGDDRTVEQQVLESNPLLEAF GNARTVRNDNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASGRDAERYNLDHPSHFHYLNQSKTYELDGVSNAEEYIRT RRAMDVVGISHDDQEAIFRTLAAILHLGNIEFSPGNEHDSSVIKDKKSNVHMQRAANLLMCDVNLLLATLCTRTIQTREGIIIKALDTNAAIASRDALAK TVYAKLFDWLVGKINRSVGQDLTSQIQIGVLDIYGFECFKNNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRKEEINWSYIEFIDNQDVLDLIEKVTYQ TDTFLEKNRDYVVLEHCNLLSSSKCSFVAGLFSSSPEETSRSSYKFSSVATRFKQQLQALMETLNTTEPHYIRCVKPNSLNRPQKFESQSILHQLRCGGV LEAVRISLAGYPTRRTYSDFVDRFGILTPEYLDGSCDERVWTEKILQKLKLQNFQLGRTKVFLRTGQIGILDARRAEVLDTAAKCIQRRVQTFITCRRFL SKKAAAVSFQAYIRGSIARKTYSQKRRTAAAITVQKWVRRWHMQHAYLKMFSAAVVIQSSICGYLSRQRFRNGRSNKAASLIQARWRMYRFRSALRHRQA SIVAIQCRWRQKLAKRELRKLKQAANETGALRLAKSKLQKQLEDLTWRLHLEKRLRVSGEDAKSVELSKLKKSLESMILELDAAKLATISECNRNAVLQN QLELSKKEKSSLERELNAMAELRKENTYLKGSVDILQKKNCALELGLVQAQKHTSETVGKMKDLEGKCFQLQQNVQSLEKKLALLEDENHVLRQKALSTS PKGNNSSLVKSFSDNLMTYYFVNSKLAPNGFMKQKYPGAIVLTSERKQNFESPTPSKLVPPFSRGLSESRRTKLTAERSQENYEFLSRCIKEDLGFIEGK PLAACIIYRCLLQWRSFETERTTIFDYIIEGINDVLKVGDENISLPYWLANASALLCLLQRNLQSNGFFTKGTPRSTSAGLPGKALKSAFKYIGFDEGLS HVEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLAFCIQAPKTVRNAGKSSRSPSGVPQQSPGSQWEGIINFLDSLMDRLRGNHVPSFFIQKLITQ VFSFINIQLFNSLLLRRECCTFSNGEYVKSGLAELEKWLTKVTQEYAGNSWHELSYIRQAVGFLVIHQKRKKSLKEIMEEMCPVLTVRQIYRISTMYWDD KYGTQSVSNEVVAEMREMLNKDSQNLTSNSFLLDDDLSIPFSTEDIDKAIPGIDPSDIDLPKYLLEHPSAQFLKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	0	1
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	1.0	0.9414
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	2.8	0.9063
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	3.2	0.8919
AT2G04235			unknown protein		Lus10025175 [exp]	9.3	0.9089
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	9.5	0.8662
AT1G73970			unknown protein		Lus10036972 [exp]	9.6	0.8659
AT2G46200			unknown protein		Lus10000549 [exp]	10.2	0.8828
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	10.5	0.9086
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	11.2	0.8951
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	11.4	0.8689

Compare expression of checked genes

Lus10009791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.