Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24890 48 / 1e-06 unknown protein AT4G31510 47 / 2e-06 unknown protein AT5G21940 43 / 5e-05 unknown protein AT2G24550 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038073 [exp] 242 / 3e-81 AT3G43850 50 / 4e-07 unknown protein Lus10020142 [exp] 43 / 0.0001 AT2G24550 113 / 9e-30 unknown protein Lus10026939 [exp] 42 / 0.0002 AT2G24550 116 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219800 [exp] 83 / 9e-19 AT5G21940 135 / 3e-38 unknown protein Potri.018G048100 [exp] 73 / 2e-15 AT5G21940 110 / 4e-29 unknown protein Potri.006G273100 [exp] 46 / 7e-06 AT5G24890 129 / 1e-36 unknown protein Potri.018G008200 [exp] 46 / 7e-06 AT5G24890 131 / 3e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009793 pacid=23159595 polypeptide=Lus10009793 locus=Lus10009793.g ID=Lus10009793.BGIv1.0 annot-version=v1.0 ATGCCGGAGATCCAACGCCGCCGTCAGTCGTTGATCGGGATAGGTGGACCTCCGCGGAATGAGATTGAGTGCAGTAGTCCCTCGGCGTCTTCTTCTTCGT CTTCTTCTGCTTCATCTTCTATCGGGAACAACAGCGACTGCGAGGAAGAGGAGAAGGAGGTGCAGAGCGCGTATAGAGGAGGAGGGAAAAGTTTTGAGTT GGGTACTTTGGAACAAAACCTGCCTCATCTCGACTTGCAAAAGGGAGGATTATCCAAGTGCTACGCTGGGAAGGCGAAATCATTTTCAGATCTAGGCAAG GCGGAATCGATTGCCAATATCAGCGAGATTCAGAAGAAGGAACACGCCATCAACAAGCGTCGACGAAATCAGATTGCTCTCAAACACCGCCCCATCGCTT CCTGCAGAAGTGCTCTTTCTCTTGCAACAACCGCCATGGAAGAAGAAGAAGGAGCTGGATTCACCTTTCAGGATTCGAATTTAGCTTCTTCTTCTCCTAC TATTCAACATCACTACCACCACTCGCAGCAACATCATAACAACAGCTATCTACCACCGATGTACCCAGGATCATCGACGCATCACAAACTCACCTCCTTG CCGTCCCCAACACCGATGCGATCCTTCTCCATGGCTGATCTGCATTACTTTTCTGCTGCTGCTGCTTCCACAAACTAA
AA sequence Show only first row Show all	>Lus10009793 pacid=23159595 polypeptide=Lus10009793 locus=Lus10009793.g ID=Lus10009793.BGIv1.0 annot-version=v1.0 MPEIQRRRQSLIGIGGPPRNEIECSSPSASSSSSSSASSSIGNNSDCEEEEKEVQSAYRGGGKSFELGTLEQNLPHLDLQKGGLSKCYAGKAKSFSDLGK AESIANISEIQKKEHAINKRRRNQIALKHRPIASCRSALSLATTAMEEEEGAGFTFQDSNLASSSPTIQHHYHHSQQHHNNSYLPPMYPGSSTHHKLTSL PSPTPMRSFSMADLHYFSAAAASTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24890			unknown protein		Lus10009793 [exp]	0	1
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	1.7	0.9750
AT1G19530			unknown protein		Lus10002540 [exp]	3.2	0.9730
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10043336 [exp]	4.5	0.9457
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	6.7	0.9625
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	6.9	0.9643
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	7.1	0.9478
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	7.5	0.9635
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	9.4	0.9553
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	9.4	0.9525
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	10.6	0.9485

Compare expression of checked genes

Lus10009793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.