Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43860 660 / 0 ATGH9A4 glycosyl hydrolase 9A4 (.1) AT4G09740 415 / 1e-141 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G02290 413 / 2e-140 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT4G23560 405 / 2e-137 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G02800 403 / 2e-136 ATCEL2 cellulase 2 (.1) AT1G64390 397 / 7e-133 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G32990 392 / 9e-132 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT4G11050 389 / 3e-129 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G71380 375 / 8e-126 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G70710 374 / 3e-125 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038075 [exp] 920 / 0 AT3G43860 686 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10017525 [exp] 440 / 6e-151 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10008208 [exp] 424 / 1e-144 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10032377 [exp] 401 / 5e-134 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 397 / 3e-132 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10001833 [exp] 395 / 8e-132 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10038223 [exp] 385 / 1e-129 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10033957 [exp] 382 / 3e-128 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 385 / 4e-128 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219700 [exp] 667 / 0 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.001G098800 [exp] 426 / 2e-145 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.002G202400 [exp] 412 / 5e-140 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 409 / 1e-138 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G157600 [exp] 401 / 2e-135 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.003G139600 [exp] 401 / 3e-134 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.019G069300 [exp] 395 / 8e-134 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G083200 [exp] 390 / 9e-132 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.001G092200 [exp] 390 / 6e-130 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 390 / 7e-130 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10009794 pacid=23159589 polypeptide=Lus10009794 locus=Lus10009794.g ID=Lus10009794.BGIv1.0 annot-version=v1.0 ATGGCAATGAGGTCATATGTGGCTGCAGCAATTATTGTAATAGCAGTGGCCACATCATTTGTTTGTGTGAATGCACATTTTGATTACAAAGATGCATTAA CCAAATCTCTTATCTTCTTAGAAGCCCAGAGGTCAGGCAAACTTCCCCCAACTAATCGCCTCCCGTGGAGAGGCGACTCCGCCCTCGATGACGGTAAAGT AGAAAATGTTGATCTGGTAGGAGGGTACTACGACGCAGGGGATAACGTCAAGTACGGACTCCCAATGGCGTTTACGGTGACGACGCTGGCGATGAATGCG GTGTTCTACCACGAGGAGCTTCAGCAGACTGGGGAATGGCAAAATACTATGGATGCCATAAAATGGGGAACCGACTTCTTCCTCAAGGCGAGCTCTAAGC GTAACAAGTTGTATGTTCAGGTAGGGGATCCGGTGAAGGACCACCAGTGTTGGGTCCGACCCGAAAATATGCAGACACCACGACCCGTGTTGCAGATCCA TGAGAATGACCCTGGTAGTGAGATCGCTGCTGAGGTGGCCGCTGCATTTGCCTCTTCCTCCATGGTCTTCAGAAGTGTCAACAAGACCTATGCTCGTCTT CTCCTCAATAAAGCTAAGAAGATGTTCTTATTTGCCAAATCACACAAGGCAACTTTCGACGGGGAATGCCCCTTCTATTGCTCTTTCTCCGGCTACAATG ATGAGCTTATGTGGGGTGCGACATGGTTATACATGGCAACAAGGAATGAGACCTACTTGAAATACCTTAAGGAGGACGCCATTAGTGGGTGCGTCGCTGA GTTCAGCTGGGATCTAAAATACGCAGGGGTTCACATTCTCCTAGCTAAACTATTCTTCGAAGGAGAAAAAAGCTTCGAGCAGTACAAGGGACAAGCCGAC AGTTTCATATGTTCAAACCTGCCAGAAAGCCCATACCATCAAGTGCGCATAACACCAGGAGGAATGATCCACCTCCGCGACGGAGCCAACAGCCAATACG TCACGGGAACTGCAAATCTATTCGCAATCTACAGCGACATCCTCCGCCAGTTCAACCAGAAGGTCTGTTGCGGGCCGAAACAGTTCGACGCAGAAGCGCT GTTGGGGTTCGCAAGGCAGCAGATGGACTATCTCCTCGGAAACAACCCGGAGAAGAGATCGTACATGGTTGGATTCGGGAACAACCCTCCTGTGCAGGCC CATCACCGTGGAGCATCCATCCCTTGCACTGCCCCCGCCGATGTCAGCTGCCCCATGAGCTTTGTTGAGTATTTCAACAAGGATACGCCCAACCCTAACG AGCTCACTGGAGCAATTCTTGGTGGACCGGACAAGAATGACAAGTTCGTTGACAAGCGTTGGGAGTCTGTCTACACTGAGCCTTGTACCTACGTCAATTC ATTAGCTGTCGGTGCCCTTGCCAAGCTCGCTGGTTGTTCTCCACCACCGCATCATTAA
AA sequence Show only first row Show all	>Lus10009794 pacid=23159589 polypeptide=Lus10009794 locus=Lus10009794.g ID=Lus10009794.BGIv1.0 annot-version=v1.0 MAMRSYVAAAIIVIAVATSFVCVNAHFDYKDALTKSLIFLEAQRSGKLPPTNRLPWRGDSALDDGKVENVDLVGGYYDAGDNVKYGLPMAFTVTTLAMNA VFYHEELQQTGEWQNTMDAIKWGTDFFLKASSKRNKLYVQVGDPVKDHQCWVRPENMQTPRPVLQIHENDPGSEIAAEVAAAFASSSMVFRSVNKTYARL LLNKAKKMFLFAKSHKATFDGECPFYCSFSGYNDELMWGATWLYMATRNETYLKYLKEDAISGCVAEFSWDLKYAGVHILLAKLFFEGEKSFEQYKGQAD SFICSNLPESPYHQVRITPGGMIHLRDGANSQYVTGTANLFAIYSDILRQFNQKVCCGPKQFDAEALLGFARQQMDYLLGNNPEKRSYMVGFGNNPPVQA HHRGASIPCTAPADVSCPMSFVEYFNKDTPNPNELTGAILGGPDKNDKFVDKRWESVYTEPCTYVNSLAVGALAKLAGCSPPPHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	2.6	0.9827
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	3.7	0.9827
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	4.6	0.9827
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	5.3	0.9827
					Lus10034954 [exp]	5.7	0.8715
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	5.9	0.9827
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	6.5	0.9000
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	6.5	0.9700
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	7.0	0.9699
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	7.5	0.9270

Compare expression of checked genes

Lus10009794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.