Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26270 369 / 3e-123 unknown protein AT3G43930 326 / 3e-106 BRCT domain-containing DNA repair protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038079 [exp] 864 / 0 AT2G26270 393 / 1e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218800 [exp] 548 / 0 AT2G26270 522 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009795 pacid=23159596 polypeptide=Lus10009795 locus=Lus10009795.g ID=Lus10009795.BGIv1.0 annot-version=v1.0 ATGGCTGGTAGAGTCCAACAACAAGTGATGGATATTAAAGGCTGTTCCAGGCTTTTCCTTGGTCTCTCTTCTTCCAGTTCCAGTTCCATTACCATGCCTT CTTTCAGAGGTTCAAAGTTACCACTTGGCTCTGAATCACCGCATCCGCCATTTGCCGCTCTCACCATTTGTGTCACTGGTCTCTCCAAAGAAGCAAGGAA ACAAGTTAAGGAAGCCACGGAGAGATTAGGCGGTCAATACAGTCCTAATTTGCACCCTCACTTAAGGTTGAGTGAGTCACTCTACACTGTTAAGAATTTG GAAGACAATGGAGTTCGCTTGGATGATTTAAACGGGCTTGTTGGTTTTGGTGATGCTGACAAGTCTTGTATTCCTTCTGGTGTTAGCGACACTAAACAAT TTGACTCATCTGAGAGTACACATAAGCATGTTTCTTGGAGAAGTTCCGACCTGATTTTTTATACTGCTTCCATGTATGTGGATCCAGATATTTCAAATGA TTTGAAGATTAAGGTCAGAGAGGCTGCTAGCCAAGAAGGGGCTACATTCTTAGATCAATGGTTTGCTGGCTGTGGTGTGAGTCATATAGTGTGTGAAGAG GCTTCTGTTCCAAGGTACCTCGGCCACACAAACAACATTGTAACGGGTGTACCACCTTTTGTTTTGGCTATGACAACCTTTGTTGCACCGCTGTGGGTAC TAAAAACTGTCAAAGAGAAACATGTACAGCGGCTTGTCCACATCTCTGCGGACTTGGCCAGGCAGGTTGCGTCACTGCTGGAAAATTCTCCCCATGGCAT TGTGGGCAAGGATGTTAGCTGGGAAGTTACACAGTGTGCAGGGAGTTCAATGAGTAGTGTAACACAGGCAGACAGGGAAAAGATTGTTGATTTTGCTAAG CAACGGGTTAGAGATCGTCGTGGTCGTCGCATGCAGACATGTCAAACTCCACTTCGTCCATTAACTCCAAGCAGCCTTCTTGAATCAATTTGCTGGTCAA TATCCGAACCTGCATCAGCTGCTTCTATTTACACAGACTGTGTTAGTAGTGAAAGCGAAATCCACACGTCTGAGTTCCATGATGCAAATGGTGATGCCAG AGATTCAGAGGCTTCATTTGCAAATCTAACCAGGCGGCTCACTGAAAGAGAAAAAACTGAACTTGTATTCCGCAGCCACTTCCTGACTATCCTCTTTCCT ATAGATCTGTTTTCAGAGATTGGACCTACTTCAAAAACCTTTTTCAGCGATGGTGGTTTTACTTGCTTACAGGTTTTGGATCACATCTATGCATTTTATC AGGAGAACATATCAGCAGCAGAAATAGAAGTGGGAATTCATGCTGATTCAAGATATGCGGATCGGCTTCGAGCTGCGTACTGCAGTAAAGGAACTGGGGA GCTTGGTTATGTGATGTTTAAACGTATAGAGTTGTTGGGGAGTCGGAGGAGTTTCGAGATGCTGAAACGGGTTAGTGGGGATAACAGCAGTAATGTATAT GAACTATTGATTAGGGCATAA
AA sequence Show only first row Show all	>Lus10009795 pacid=23159596 polypeptide=Lus10009795 locus=Lus10009795.g ID=Lus10009795.BGIv1.0 annot-version=v1.0 MAGRVQQQVMDIKGCSRLFLGLSSSSSSSITMPSFRGSKLPLGSESPHPPFAALTICVTGLSKEARKQVKEATERLGGQYSPNLHPHLRLSESLYTVKNL EDNGVRLDDLNGLVGFGDADKSCIPSGVSDTKQFDSSESTHKHVSWRSSDLIFYTASMYVDPDISNDLKIKVREAASQEGATFLDQWFAGCGVSHIVCEE ASVPRYLGHTNNIVTGVPPFVLAMTTFVAPLWVLKTVKEKHVQRLVHISADLARQVASLLENSPHGIVGKDVSWEVTQCAGSSMSSVTQADREKIVDFAK QRVRDRRGRRMQTCQTPLRPLTPSSLLESICWSISEPASAASIYTDCVSSESEIHTSEFHDANGDARDSEASFANLTRRLTEREKTELVFRSHFLTILFP IDLFSEIGPTSKTFFSDGGFTCLQVLDHIYAFYQENISAAEIEVGIHADSRYADRLRAAYCSKGTGELGYVMFKRIELLGSRRSFEMLKRVSGDNSSNVY ELLIRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26270			unknown protein		Lus10009795 [exp]	0	1
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	2.4	0.7885
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	6.6	0.7822
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	8.7	0.7469
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	15.7	0.7437
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10011439 [exp]	20.0	0.7509
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	20.1	0.7391
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	22.8	0.7426
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	27.6	0.7263
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	30.0	0.7003
AT4G17140			pleckstrin homology (PH) domai...		Lus10039773 [exp]	31.9	0.6486

Compare expression of checked genes

Lus10009795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.